Files
Aperant/apps/backend/memory/patterns.py
T
TamerineSky 6a6247bbf2 Fix Windows UTF-8 encoding errors across entire backend (251 instances) (#782)
* Fix UTF-8 encoding for Priorities 1-2 (Core & Agents - 18 instances)

Add encoding="utf-8" to file operations in:
- Priority 1: Core Infrastructure (8 instances)
  - core/progress.py (6 read operations)
  - core/debug.py (1 append operation)
  - core/workspace/setup.py (1 read operation)

- Priority 2: Agent System (10 instances)
  - agents/utils.py (1 read)
  - agents/tools_pkg/tools/subtask.py (1 read, 1 write)
  - agents/tools_pkg/tools/memory.py (2 read, 1 write, 1 append)
  - agents/tools_pkg/tools/qa.py (1 read, 1 write)
  - agents/tools_pkg/tools/progress.py (1 read)

All changes use double quotes for ruff format compliance.

* Fix UTF-8 encoding for Priorities 3-4 (Spec & Project - 26 instances)

Add encoding="utf-8" to file operations in:
- Priority 3: Spec Pipeline (21 instances)
  - spec/context.py (4: 2 read, 2 write)
  - spec/complexity.py (3: 2 read, 1 write)
  - spec/requirements.py (3: 2 read, 1 write)
  - spec/validator.py (3 write operations)
  - spec/writer.py (2: 1 read, 1 write)
  - spec/discovery.py (1 read)
  - spec/pipeline/orchestrator.py (2 read)
  - spec/phases/requirements_phases.py (1 write)
  - spec/validate_pkg/auto_fix.py (2: 1 read, 1 write)

- Priority 4: Project Analyzer (5 instances)
  - project/analyzer.py (2: 1 read, 1 write)
  - project/config_parser.py (2 read operations)
  - project/stack_detector.py (1 read)

All changes use double quotes for ruff format compliance.

* Fix UTF-8 encoding for Priorities 5-7 (Services, Analysis, Ideation - 43 instances)

Add encoding="utf-8" to file operations in:
- Priority 5: Services (12 instances)
  - services/recovery.py (8: 4 read, 4 write)
  - services/context.py (4 read operations)

- Priority 6: Analysis & QA (6 instances)
  - analysis/analyzers/__init__.py (2 write)
  - analysis/insight_extractor.py (1 read)
  - qa/criteria.py (2: 1 read, 1 write)
  - qa/report.py (1 read)

- Priority 7: Ideation & Roadmap (25 instances)
  - ideation/analyzer.py (3 read)
  - ideation/formatter.py (4 read, 1 write)
  - ideation/phase_executor.py (5: 3 read, 2 write)
  - ideation/runner.py (1 read)
  - runners/roadmap/competitor_analyzer.py (3: 1 read, 2 write)
  - runners/roadmap/graph_integration.py (3 write)
  - runners/roadmap/orchestrator.py (1 read)
  - runners/roadmap/phases.py (2 read)
  - runners/insights_runner.py (3 read)

All changes use double quotes for ruff format compliance.

* Fix UTF-8 encoding for Priorities 8-14 (All remaining - 85+ instances)

Add encoding="utf-8" to file operations across all remaining modules:

Priorities 8-10 (Merge, Memory, Integrations - 26 instances):
- merge/ (4 files)
- memory/ (3 files)
- context/ (3 files)
- integrations/ (4 files)

Priorities 11-14 (GitHub, GitLab, AI, Other - 59 instances):
- runners/github/ (19 files)
- runners/gitlab/ (3 files)
- runners/ai_analyzer/ (1 file)

All changes use double quotes for ruff format compliance.
Applied using Python regex script for efficiency.

* Fix UTF-8 encoding for missed instances (23 instances)

Fix remaining instances missed by batch script:
- cli/batch_commands.py (3 instances)
- cli/followup_commands.py (1 instance)
- core/client.py (1 instance)
- phase_config.py (1 instance)
- planner_lib/context.py (4 instances)
- prediction/main.py (1 instance)
- prediction/memory_loader.py (1 instance)
- prompts_pkg/prompts.py (2 instances)
- review/formatters.py (1 instance)
- review/state.py (2 instances)
- spec/phases/spec_phases.py (1 instance)
- spec/pipeline/models.py (1 instance)
- spec/validate_pkg/validators/context_validator.py (1 instance)
- spec/validate_pkg/validators/implementation_plan_validator.py (1 instance)
- ui/status.py (2 instances)

All encoding parameters use double quotes for ruff format compliance.
Verified: 0 instances without encoding remain in source code.

* Fix missed os.fdopen() calls and duplicate encoding bug

Thorough verification found 3 additional issues:
- runners/github/file_lock.py:462 - os.fdopen missing encoding
- runners/github/trust.py:442 - os.fdopen missing encoding
- runners/insights_runner.py:372 - duplicate encoding parameter

All fixed. Final count: 251 instances with encoding="utf-8"

* Fix missed Path.read_text() and Path.write_text() encoding (99 instances)

Gemini Code Assist review found instances we missed:
- Path.read_text() without encoding: 77 instances → fixed
- Path.write_text() without encoding: 22 instances → fixed

Total UTF-8 encoding fixes: 350 instances across codebase
- open() operations: 251 instances
- Path.read_text(): 98 instances
- Path.write_text(): 30 instances

All text file operations now explicitly use encoding="utf-8".

Addresses feedback from PR #782 review.

* Fix critical syntax errors from CodeRabbit review

- Fix os.getpid() syntax error in core/workspace/models.py (2 instances)
  Changed: os.getpid(, encoding="utf-8") -> str(os.getpid())

- Fix json.dumps invalid encoding parameter (3 instances)
  json.dumps() doesn't accept encoding parameter
  Changed: json.dumps(data, encoding="utf-8") -> json.dumps(data)
  Files: runners/ai_analyzer/cache_manager.py, runners/github/test_file_lock.py

- Fix tempfile.NamedTemporaryFile missing encoding
  Added encoding="utf-8" to spec/requirements.py:22

- Fix subprocess.run text=True to encoding
  Changed: text=True -> encoding="utf-8" in core/workspace/setup.py:375

All critical syntax errors from CodeRabbit review resolved.

* Fix critical syntax errors in test_context_gatherer.py

- Line 78: Move encoding="utf-8" outside of JS string content
  Changed: write_text("...encoding="utf-8"...")
  To: write_text("...", encoding="utf-8")

- Line 102: Move encoding="utf-8" outside of JS string content
  Changed: write_text("...encoding="utf-8"...")
  To: write_text("...", encoding="utf-8")

Fixes syntax errors where encoding parameter was incorrectly placed
inside the JavaScript code string instead of as write_text() parameter.

* Fix CodeRabbit issues: UnicodeDecodeError handling and trailing newlines

- Add UnicodeDecodeError to exception handling in agents/utils.py and spec/validate_pkg/auto_fix.py
- Fix trailing newline preservation in merge/file_merger.py (2 locations)
- Add encoding parameter to atomic_write() in runners/github/file_lock.py

These fixes ensure robust error handling for malformed UTF-8 files
and preserve file formatting during merge operations.

* Fix test fixture to use UTF-8 encoding consistently

Update spec_file fixture in tests/conftest.py to write spec file
with encoding="utf-8" to match how it's read in validators.

This ensures consistency between test fixtures and production code.

* Fix linting errors and security vulnerabilities from merge

- Remove unused tree-sitter methods in semantic_analyzer.py that caused F821 undefined name errors
- Fix regex injection vulnerability in bump-version.js by properly escaping all regex special characters
- Add escapeRegex() function to prevent security issues when version string is used in RegExp constructor

Resolves ruff linting failures and CodeQL security alerts.

* Fix code formatting for ruff compliance

Apply formatting fixes to meet line length requirements:
- context/builder.py: Split long line with array slicing
- planner_lib/context.py: Split long ternary expression
- spec/requirements.py: Split long tempfile.NamedTemporaryFile call

Resolves ruff format check failures.

* Fix missing UTF-8 encoding in init.py gitignore operations

Found by pre-commit hook testing in PR #795:
- Line 96: Path.read_text() without encoding
- Line 122: Path.write_text() without encoding

These handle .gitignore file operations and could fail on Windows
with special characters in gitignore comments or entries.

Total fixes in PR #782: 253 instances (was 251, +2 from init.py)

* Add pre-commit hook for UTF-8 encoding enforcement

1. Encoding Check Script (scripts/check_encoding.py):
   - Validates all file operations have encoding="utf-8"
   - Checks open(), Path.read_text(), Path.write_text()
   - Checks json.load/dump with open()
   - Allows binary mode without encoding
   - Windows-compatible emoji output with UTF-8 reconfiguration

2. Pre-commit Config (.pre-commit-config.yaml):
   - Added check-file-encoding hook for apps/backend/
   - Runs automatically before commits
   - Scoped to backend Python files only

3. Tests (tests/test_check_encoding.py):
   - Comprehensive test coverage (10 tests, all passing)
   - Tests detection of missing encoding
   - Tests allowlist for binary files
   - Tests multiple issues in single file
   - Tests file type filtering

Purpose:
- Prevent regression of 251 UTF-8 encoding fixes from PR #782
- Catch missing encoding in new code during development
- Fast feedback loop for developers

Implementation Notes:
- Hook scoped to apps/backend/ to avoid false positives in test code
- Uses simple regex matching for speed
- Compatible with existing pre-commit infrastructure
- Already caught 6 real issues in apps/backend/core/progress.py

Related: PR #782 - Fix Windows UTF-8 encoding errors

* Address CodeRabbit and Gemini review feedback

Fixes based on automated review comments:

1. Binary Mode Detection (Critical Fix):
   - Replaced brittle regex with robust pattern: r'["'][rwax+]*b[rwax+]*["']'
   - Now correctly detects all binary modes: rb, wb, ab, r+b, w+b, etc.
   - Prevents false positives on text mode 'w' without 'b'
   - Added comprehensive tests for wb, ab, and text w modes

2. Encoding Detection Robustness (Critical Fix):
   - Changed from 'encoding=' string match to word boundary regex: r'\bencoding\s*='
   - Now handles encoding with spaces: encoding = "utf-8"
   - Prevents false matches of substrings containing 'encoding='
   - Applied across all checks (open, read_text, write_text, json.load, json.dump)
   - Added test for spaces around equals sign

3. Test Coverage Improvements:
   - Added json.dump() with encoding test (passing case)
   - Added json.dump() without encoding test (failing case)
   - Fixed test assertions to match actual behavior (== 1 not == 2)
   - Added 6 new tests for improved binary/text mode coverage
   - Total tests increased from 10 to 16, all passing 

4. Code Cleanup:
   - Removed unused pytest import (CodeQL warning)
   - Simplified check_files() to remove unused variable tracking

All changes validated with comprehensive test suite (16/16 passing).

Related: PR #795 review feedback from CodeRabbit and Gemini Code Assist

* docs: Add UTF-8 encoding guidelines and Windows development guide

1. CONTRIBUTING.md:
   - Added concise file encoding section after Code Style
   - DO/DON'T examples for common file operations
   - Covers open(), Path methods, json operations
   - References PR #782 and windows-development.md

2. guides/windows-development.md (NEW):
   - Comprehensive Windows development guide
   - File encoding (cp1252 vs UTF-8 issue)
   - Line endings, path separators, shell commands
   - Development environment recommendations
   - Common pitfalls and solutions
   - Testing guidelines

3. .github/PULL_REQUEST_TEMPLATE.md:
   - Added encoding checklist item for Python PRs
   - Helps catch missing encoding during review

4. guides/README.md:
   - Added windows-development.md to guide index
   - Organized with CLI-USAGE and linux guides

Purpose: Educate developers about UTF-8 encoding requirements to prevent
regressions of the 251 encoding issues fixed in PR #782. Automated checking
via pre-commit hooks (PR #795) + developer education ensures long-term
Windows compatibility.

Related:
- PR #782: Fix Windows UTF-8 encoding errors (251 instances)
- PR #795: Add pre-commit hooks for encoding enforcement

* Address review comments from CodeRabbit and Gemini

1. Fix CONTRIBUTING.md markdown linting issues
   - Add blank lines around code blocks (MD031)
   - Add JSON write example with ensure_ascii=False (Gemini suggestion)

2. Fix guides/windows-development.md markdown linting (39 violations)
   - Rename duplicate headings: "The Problem"/"The Solution" → "Problem"/"Solution" (MD024)
   - Add blank lines around all code blocks (MD031)
   - Add language specifiers to code blocks (MD040)
   - Add blank lines before/after headings (MD022)
   - Wrap long lines to <=80 characters (MD013)
   - Add blank line before list (MD032)
   - Use Gemini's idiomatic line ending normalization pattern

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Fix additional UTF-8 encoding issues and improve encoding check script

- Add encoding="utf-8" to 5 files that were missing it:
  - cli/workspace_commands.py: read_text for worktree config
  - context/pattern_discovery.py: read_text with errors param
  - context/search.py: read_text with errors param
  - core/sentry.py: open for package.json version detection
  - core/workspace/setup.py: open for security profile JSON

- Improve check_encoding.py script to reduce false positives:
  - Use negative lookbehind to exclude os.open(), urlopen(), etc.
  - Handle nested parentheses correctly when checking args
  - Skip self.method.read_text() calls (custom methods, not Path)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Fix missing UTF-8 encoding in locked_write() function

Add encoding parameter to locked_write() async context manager and
use it in os.fdopen() call. This fixes HIGH priority issue from PR review
where locked_write() was missing UTF-8 encoding support, which could cause
encoding errors on Windows when writing files with non-ASCII content.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Add UnicodeDecodeError handling for file loading resilience

Address CodeRabbit review feedback:
- runner.py: Add UnicodeDecodeError to exception handling when loading batch files
- trust.py: Add exception handling in get_state() and get_all_states() to
  gracefully handle corrupted state files instead of failing completely

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Fix atomic_write to handle binary mode correctly

The atomic_write function was unconditionally passing encoding to os.fdopen,
which would crash with ValueError if called with binary mode (e.g., 'wb').
Apply the same fix used in locked_write: only pass encoding for text modes.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Fix run_git() call with invalid parameters in setup.py

Remove capture_output and encoding kwargs from run_git() call - these
parameters are already handled internally by run_git() and passing them
causes TypeError since the function doesn't accept them.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Fix CodeQL warnings and potential double-newline bug

- Remove unused is_path_call variables in check_encoding.py
- Remove unused failed_count variable in check_encoding.py
- Remove unused escapeRegex function in bump-version.js
- Fix potential double-newline when adding imports in file_merger.py
  (strip trailing newlines from content_after before inserting)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Fix Ruff formatting: wrap long line in file_merger.py

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Add UnicodeDecodeError handling to all JSON file loading

Comprehensively add UnicodeDecodeError to exception handlers across
the codebase to handle legacy-encoded or corrupted files gracefully:

- 32+ locations now catch UnicodeDecodeError alongside OSError and
  json.JSONDecodeError
- context/builder.py: Regenerate index on decode failure
- planner_lib/context.py: Use empty dicts on decode failure
- check_encoding.py: Handle OSError for unreadable files
- cleanup.py: Handle decode errors in index pruning

This ensures the codebase is robust against non-UTF-8 files that may
exist from previous Windows runs with cp1252 encoding.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Add explanatory comments to empty except clauses

Address CodeQL notices about empty except clauses with just 'pass'
by adding explanatory comments describing the intent.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Fix review issues from Andy's Auto Claude PR Review

1. [HIGH] Fix double-close bug in trust.py:449
   - Remove try/except around os.fdopen since it takes ownership of fd
   - The with statement handles closing, no need for explicit os.close()

2. [LOW] Fix dead code in file_merger.py:87,159
   - Simplify endswith check to just '\n' since content is already
     normalized to LF at that point

3. [LOW] Fix escaped backslash-n in test_context_gatherer.py:150
   - Change "\n" (literal backslash-n) to "\n" (actual newline)

4. [LOW] Fix coder.md examples missing encoding parameter
   - Add encoding="utf-8" to read_text() and open() calls in examples

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: TamerineSky <TamerineSky@users.noreply.github.com>
Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-19 22:22:55 +01:00

168 lines
5.0 KiB
Python

#!/usr/bin/env python3
"""
Patterns and Gotchas Management
================================
Functions for managing code patterns and gotchas (pitfalls to avoid).
"""
import logging
from pathlib import Path
from .graphiti_helpers import get_graphiti_memory, is_graphiti_memory_enabled, run_async
from .paths import get_memory_dir
logger = logging.getLogger(__name__)
def append_gotcha(spec_dir: Path, gotcha: str) -> None:
"""
Append a gotcha (pitfall to avoid) to the gotchas list.
Gotchas are deduplicated - if the same gotcha already exists,
it won't be added again.
Args:
spec_dir: Path to spec directory
gotcha: Description of the pitfall to avoid
Example:
append_gotcha(spec_dir, "Database connections must be closed in workers")
append_gotcha(spec_dir, "API rate limits: 100 req/min per IP")
"""
memory_dir = get_memory_dir(spec_dir)
gotchas_file = memory_dir / "gotchas.md"
# Load existing gotchas
existing_gotchas = set()
if gotchas_file.exists():
content = gotchas_file.read_text(encoding="utf-8")
# Extract bullet points
for line in content.split("\n"):
line = line.strip()
if line.startswith("- "):
existing_gotchas.add(line[2:].strip())
# Add new gotcha if not duplicate
gotcha_stripped = gotcha.strip()
if gotcha_stripped and gotcha_stripped not in existing_gotchas:
# Append to file
with open(gotchas_file, "a", encoding="utf-8") as f:
if gotchas_file.stat().st_size == 0:
# First entry - add header
f.write("# Gotchas and Pitfalls\n\n")
f.write("Things to watch out for in this codebase:\n\n")
f.write(f"- {gotcha_stripped}\n")
# Also save to Graphiti if enabled
if is_graphiti_memory_enabled():
try:
graphiti = get_graphiti_memory(spec_dir)
if graphiti:
run_async(graphiti.save_gotcha(gotcha_stripped))
except Exception as e:
logger.warning(f"Graphiti gotcha save failed: {e}")
def load_gotchas(spec_dir: Path) -> list[str]:
"""
Load all gotchas.
Args:
spec_dir: Path to spec directory
Returns:
List of gotcha strings
"""
memory_dir = get_memory_dir(spec_dir)
gotchas_file = memory_dir / "gotchas.md"
if not gotchas_file.exists():
return []
content = gotchas_file.read_text(encoding="utf-8")
gotchas = []
for line in content.split("\n"):
line = line.strip()
if line.startswith("- "):
gotchas.append(line[2:].strip())
return gotchas
def append_pattern(spec_dir: Path, pattern: str) -> None:
"""
Append a code pattern to follow.
Patterns are deduplicated - if the same pattern already exists,
it won't be added again.
Args:
spec_dir: Path to spec directory
pattern: Description of the code pattern
Example:
append_pattern(spec_dir, "Use try/except with specific exceptions")
append_pattern(spec_dir, "All API responses use {success: bool, data: any, error: string}")
"""
memory_dir = get_memory_dir(spec_dir)
patterns_file = memory_dir / "patterns.md"
# Load existing patterns
existing_patterns = set()
if patterns_file.exists():
content = patterns_file.read_text(encoding="utf-8")
# Extract bullet points
for line in content.split("\n"):
line = line.strip()
if line.startswith("- "):
existing_patterns.add(line[2:].strip())
# Add new pattern if not duplicate
pattern_stripped = pattern.strip()
if pattern_stripped and pattern_stripped not in existing_patterns:
# Append to file
with open(patterns_file, "a", encoding="utf-8") as f:
if patterns_file.stat().st_size == 0:
# First entry - add header
f.write("# Code Patterns\n\n")
f.write("Established patterns to follow in this codebase:\n\n")
f.write(f"- {pattern_stripped}\n")
# Also save to Graphiti if enabled
if is_graphiti_memory_enabled():
try:
graphiti = get_graphiti_memory(spec_dir)
if graphiti:
run_async(graphiti.save_pattern(pattern_stripped))
except Exception as e:
logger.warning(f"Graphiti pattern save failed: {e}")
def load_patterns(spec_dir: Path) -> list[str]:
"""
Load all code patterns.
Args:
spec_dir: Path to spec directory
Returns:
List of pattern strings
"""
memory_dir = get_memory_dir(spec_dir)
patterns_file = memory_dir / "patterns.md"
if not patterns_file.exists():
return []
content = patterns_file.read_text(encoding="utf-8")
patterns = []
for line in content.split("\n"):
line = line.strip()
if line.startswith("- "):
patterns.append(line[2:].strip())
return patterns