Simey Lameze
3991 lines
105 KiB
PHP
3991 lines
105 KiB
PHP
<?php
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/*
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* Copyright 2010 Google Inc.
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*
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* Licensed under the Apache License, Version 2.0 (the "License"); you may not
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* use this file except in compliance with the License. You may obtain a copy of
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* the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
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* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
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* License for the specific language governing permissions and limitations under
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* the License.
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*/
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/**
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* Service definition for Genomics (v1).
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*
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* <p>
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* An API to store, process, explore, and share DNA sequence reads, reference-
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* based alignments, and variant calls.</p>
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*
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* <p>
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* For more information about this service, see the API
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* <a href="" target="_blank">Documentation</a>
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* </p>
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*
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* @author Google, Inc.
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*/
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class Google_Service_Genomics extends Google_Service
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{
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/** View and manage your data in Google BigQuery. */
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const BIGQUERY =
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"https://www.googleapis.com/auth/bigquery";
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/** View and manage your data across Google Cloud Platform services. */
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const CLOUD_PLATFORM =
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"https://www.googleapis.com/auth/cloud-platform";
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/** Manage your data in Google Cloud Storage. */
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const DEVSTORAGE_READ_WRITE =
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"https://www.googleapis.com/auth/devstorage.read_write";
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/** View and manage Genomics data. */
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const GENOMICS =
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"https://www.googleapis.com/auth/genomics";
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/** View Genomics data. */
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const GENOMICS_READONLY =
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"https://www.googleapis.com/auth/genomics.readonly";
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public $callsets;
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public $datasets;
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public $operations;
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public $readgroupsets;
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public $readgroupsets_coveragebuckets;
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public $reads;
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public $references;
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public $references_bases;
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public $referencesets;
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public $variants;
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public $variantsets;
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/**
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* Constructs the internal representation of the Genomics service.
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*
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* @param Google_Client $client
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*/
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public function __construct(Google_Client $client)
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{
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parent::__construct($client);
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$this->rootUrl = 'https://genomics.googleapis.com/';
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$this->servicePath = '';
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$this->version = 'v1';
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$this->serviceName = 'genomics';
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$this->callsets = new Google_Service_Genomics_Callsets_Resource(
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$this,
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$this->serviceName,
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'callsets',
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array(
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'methods' => array(
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'create' => array(
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'path' => 'v1/callsets',
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'httpMethod' => 'POST',
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'parameters' => array(),
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),'delete' => array(
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'path' => 'v1/callsets/{callSetId}',
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'httpMethod' => 'DELETE',
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'parameters' => array(
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'callSetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'get' => array(
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'path' => 'v1/callsets/{callSetId}',
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'httpMethod' => 'GET',
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'parameters' => array(
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'callSetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'patch' => array(
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'path' => 'v1/callsets/{callSetId}',
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'httpMethod' => 'PATCH',
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'parameters' => array(
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'callSetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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'updateMask' => array(
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'location' => 'query',
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'type' => 'string',
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),
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),
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),'search' => array(
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'path' => 'v1/callsets/search',
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'httpMethod' => 'POST',
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'parameters' => array(),
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),
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)
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)
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);
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$this->datasets = new Google_Service_Genomics_Datasets_Resource(
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$this,
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$this->serviceName,
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'datasets',
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array(
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'methods' => array(
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'create' => array(
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'path' => 'v1/datasets',
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'httpMethod' => 'POST',
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'parameters' => array(),
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),'delete' => array(
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'path' => 'v1/datasets/{datasetId}',
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'httpMethod' => 'DELETE',
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'parameters' => array(
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'datasetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'get' => array(
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'path' => 'v1/datasets/{datasetId}',
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'httpMethod' => 'GET',
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'parameters' => array(
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'datasetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'getIamPolicy' => array(
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'path' => 'v1/{+resource}:getIamPolicy',
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'httpMethod' => 'POST',
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'parameters' => array(
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'resource' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'list' => array(
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'path' => 'v1/datasets',
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'httpMethod' => 'GET',
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'parameters' => array(
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'projectId' => array(
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'location' => 'query',
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'type' => 'string',
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),
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'pageSize' => array(
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'location' => 'query',
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'type' => 'integer',
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),
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'pageToken' => array(
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'location' => 'query',
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'type' => 'string',
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),
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),
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),'patch' => array(
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'path' => 'v1/datasets/{datasetId}',
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'httpMethod' => 'PATCH',
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'parameters' => array(
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'datasetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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'updateMask' => array(
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'location' => 'query',
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'type' => 'string',
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),
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),
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),'setIamPolicy' => array(
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'path' => 'v1/{+resource}:setIamPolicy',
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'httpMethod' => 'POST',
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'parameters' => array(
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'resource' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'testIamPermissions' => array(
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'path' => 'v1/{+resource}:testIamPermissions',
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'httpMethod' => 'POST',
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'parameters' => array(
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'resource' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'undelete' => array(
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'path' => 'v1/datasets/{datasetId}:undelete',
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'httpMethod' => 'POST',
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'parameters' => array(
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'datasetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),
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)
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)
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);
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$this->operations = new Google_Service_Genomics_Operations_Resource(
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$this,
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$this->serviceName,
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'operations',
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array(
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'methods' => array(
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'cancel' => array(
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'path' => 'v1/{+name}:cancel',
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'httpMethod' => 'POST',
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'parameters' => array(
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'name' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'delete' => array(
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'path' => 'v1/{+name}',
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'httpMethod' => 'DELETE',
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'parameters' => array(
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'name' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'get' => array(
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'path' => 'v1/{+name}',
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'httpMethod' => 'GET',
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'parameters' => array(
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'name' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'list' => array(
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'path' => 'v1/{+name}',
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'httpMethod' => 'GET',
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'parameters' => array(
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'name' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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'filter' => array(
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'location' => 'query',
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'type' => 'string',
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),
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'pageToken' => array(
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'location' => 'query',
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'type' => 'string',
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),
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'pageSize' => array(
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'location' => 'query',
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'type' => 'integer',
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),
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),
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),
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)
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)
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);
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$this->readgroupsets = new Google_Service_Genomics_Readgroupsets_Resource(
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$this,
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$this->serviceName,
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'readgroupsets',
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array(
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'methods' => array(
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'delete' => array(
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'path' => 'v1/readgroupsets/{readGroupSetId}',
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'httpMethod' => 'DELETE',
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'parameters' => array(
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'readGroupSetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'export' => array(
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'path' => 'v1/readgroupsets/{readGroupSetId}:export',
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'httpMethod' => 'POST',
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'parameters' => array(
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'readGroupSetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'get' => array(
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'path' => 'v1/readgroupsets/{readGroupSetId}',
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'httpMethod' => 'GET',
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'parameters' => array(
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'readGroupSetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'import' => array(
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'path' => 'v1/readgroupsets:import',
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'httpMethod' => 'POST',
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'parameters' => array(),
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),'patch' => array(
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'path' => 'v1/readgroupsets/{readGroupSetId}',
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'httpMethod' => 'PATCH',
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'parameters' => array(
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'readGroupSetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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'updateMask' => array(
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'location' => 'query',
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'type' => 'string',
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),
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),
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),'search' => array(
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'path' => 'v1/readgroupsets/search',
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'httpMethod' => 'POST',
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'parameters' => array(),
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),
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)
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)
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);
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$this->readgroupsets_coveragebuckets = new Google_Service_Genomics_ReadgroupsetsCoveragebuckets_Resource(
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$this,
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$this->serviceName,
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'coveragebuckets',
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array(
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'methods' => array(
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'list' => array(
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'path' => 'v1/readgroupsets/{readGroupSetId}/coveragebuckets',
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'httpMethod' => 'GET',
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'parameters' => array(
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'readGroupSetId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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'end' => array(
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'location' => 'query',
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'type' => 'string',
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),
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'pageSize' => array(
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'location' => 'query',
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'type' => 'integer',
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),
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'start' => array(
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'location' => 'query',
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'type' => 'string',
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),
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'pageToken' => array(
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'location' => 'query',
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'type' => 'string',
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),
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'targetBucketWidth' => array(
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'location' => 'query',
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'type' => 'string',
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),
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'referenceName' => array(
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'location' => 'query',
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'type' => 'string',
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),
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),
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),
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)
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)
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);
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$this->reads = new Google_Service_Genomics_Reads_Resource(
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$this,
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$this->serviceName,
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'reads',
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array(
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'methods' => array(
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'search' => array(
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'path' => 'v1/reads/search',
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'httpMethod' => 'POST',
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'parameters' => array(),
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),
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)
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)
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);
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$this->references = new Google_Service_Genomics_References_Resource(
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$this,
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$this->serviceName,
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'references',
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array(
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'methods' => array(
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'get' => array(
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'path' => 'v1/references/{referenceId}',
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'httpMethod' => 'GET',
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'parameters' => array(
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'referenceId' => array(
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'location' => 'path',
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'type' => 'string',
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'required' => true,
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),
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),
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),'search' => array(
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'path' => 'v1/references/search',
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'httpMethod' => 'POST',
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'parameters' => array(),
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),
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)
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)
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);
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$this->references_bases = new Google_Service_Genomics_ReferencesBases_Resource(
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$this,
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$this->serviceName,
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'bases',
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array(
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'methods' => array(
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'list' => array(
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'path' => 'v1/references/{referenceId}/bases',
|
|
'httpMethod' => 'GET',
|
|
'parameters' => array(
|
|
'referenceId' => array(
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'location' => 'path',
|
|
'type' => 'string',
|
|
'required' => true,
|
|
),
|
|
'start' => array(
|
|
'location' => 'query',
|
|
'type' => 'string',
|
|
),
|
|
'end' => array(
|
|
'location' => 'query',
|
|
'type' => 'string',
|
|
),
|
|
'pageSize' => array(
|
|
'location' => 'query',
|
|
'type' => 'integer',
|
|
),
|
|
'pageToken' => array(
|
|
'location' => 'query',
|
|
'type' => 'string',
|
|
),
|
|
),
|
|
),
|
|
)
|
|
)
|
|
);
|
|
$this->referencesets = new Google_Service_Genomics_Referencesets_Resource(
|
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$this,
|
|
$this->serviceName,
|
|
'referencesets',
|
|
array(
|
|
'methods' => array(
|
|
'get' => array(
|
|
'path' => 'v1/referencesets/{referenceSetId}',
|
|
'httpMethod' => 'GET',
|
|
'parameters' => array(
|
|
'referenceSetId' => array(
|
|
'location' => 'path',
|
|
'type' => 'string',
|
|
'required' => true,
|
|
),
|
|
),
|
|
),'search' => array(
|
|
'path' => 'v1/referencesets/search',
|
|
'httpMethod' => 'POST',
|
|
'parameters' => array(),
|
|
),
|
|
)
|
|
)
|
|
);
|
|
$this->variants = new Google_Service_Genomics_Variants_Resource(
|
|
$this,
|
|
$this->serviceName,
|
|
'variants',
|
|
array(
|
|
'methods' => array(
|
|
'create' => array(
|
|
'path' => 'v1/variants',
|
|
'httpMethod' => 'POST',
|
|
'parameters' => array(),
|
|
),'delete' => array(
|
|
'path' => 'v1/variants/{variantId}',
|
|
'httpMethod' => 'DELETE',
|
|
'parameters' => array(
|
|
'variantId' => array(
|
|
'location' => 'path',
|
|
'type' => 'string',
|
|
'required' => true,
|
|
),
|
|
),
|
|
),'get' => array(
|
|
'path' => 'v1/variants/{variantId}',
|
|
'httpMethod' => 'GET',
|
|
'parameters' => array(
|
|
'variantId' => array(
|
|
'location' => 'path',
|
|
'type' => 'string',
|
|
'required' => true,
|
|
),
|
|
),
|
|
),'import' => array(
|
|
'path' => 'v1/variants:import',
|
|
'httpMethod' => 'POST',
|
|
'parameters' => array(),
|
|
),'patch' => array(
|
|
'path' => 'v1/variants/{variantId}',
|
|
'httpMethod' => 'PATCH',
|
|
'parameters' => array(
|
|
'variantId' => array(
|
|
'location' => 'path',
|
|
'type' => 'string',
|
|
'required' => true,
|
|
),
|
|
'updateMask' => array(
|
|
'location' => 'query',
|
|
'type' => 'string',
|
|
),
|
|
),
|
|
),'search' => array(
|
|
'path' => 'v1/variants/search',
|
|
'httpMethod' => 'POST',
|
|
'parameters' => array(),
|
|
),
|
|
)
|
|
)
|
|
);
|
|
$this->variantsets = new Google_Service_Genomics_Variantsets_Resource(
|
|
$this,
|
|
$this->serviceName,
|
|
'variantsets',
|
|
array(
|
|
'methods' => array(
|
|
'create' => array(
|
|
'path' => 'v1/variantsets',
|
|
'httpMethod' => 'POST',
|
|
'parameters' => array(),
|
|
),'delete' => array(
|
|
'path' => 'v1/variantsets/{variantSetId}',
|
|
'httpMethod' => 'DELETE',
|
|
'parameters' => array(
|
|
'variantSetId' => array(
|
|
'location' => 'path',
|
|
'type' => 'string',
|
|
'required' => true,
|
|
),
|
|
),
|
|
),'export' => array(
|
|
'path' => 'v1/variantsets/{variantSetId}:export',
|
|
'httpMethod' => 'POST',
|
|
'parameters' => array(
|
|
'variantSetId' => array(
|
|
'location' => 'path',
|
|
'type' => 'string',
|
|
'required' => true,
|
|
),
|
|
),
|
|
),'get' => array(
|
|
'path' => 'v1/variantsets/{variantSetId}',
|
|
'httpMethod' => 'GET',
|
|
'parameters' => array(
|
|
'variantSetId' => array(
|
|
'location' => 'path',
|
|
'type' => 'string',
|
|
'required' => true,
|
|
),
|
|
),
|
|
),'patch' => array(
|
|
'path' => 'v1/variantsets/{variantSetId}',
|
|
'httpMethod' => 'PATCH',
|
|
'parameters' => array(
|
|
'variantSetId' => array(
|
|
'location' => 'path',
|
|
'type' => 'string',
|
|
'required' => true,
|
|
),
|
|
'updateMask' => array(
|
|
'location' => 'query',
|
|
'type' => 'string',
|
|
),
|
|
),
|
|
),'search' => array(
|
|
'path' => 'v1/variantsets/search',
|
|
'httpMethod' => 'POST',
|
|
'parameters' => array(),
|
|
),
|
|
)
|
|
)
|
|
);
|
|
}
|
|
}
|
|
|
|
|
|
/**
|
|
* The "callsets" collection of methods.
|
|
* Typical usage is:
|
|
* <code>
|
|
* $genomicsService = new Google_Service_Genomics(...);
|
|
* $callsets = $genomicsService->callsets;
|
|
* </code>
|
|
*/
|
|
class Google_Service_Genomics_Callsets_Resource extends Google_Service_Resource
|
|
{
|
|
|
|
/**
|
|
* Creates a new call set. (callsets.create)
|
|
*
|
|
* @param Google_CallSet $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_CallSet
|
|
*/
|
|
public function create(Google_Service_Genomics_CallSet $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('create', array($params), "Google_Service_Genomics_CallSet");
|
|
}
|
|
|
|
/**
|
|
* Deletes a call set. (callsets.delete)
|
|
*
|
|
* @param string $callSetId The ID of the call set to be deleted.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Empty
|
|
*/
|
|
public function delete($callSetId, $optParams = array())
|
|
{
|
|
$params = array('callSetId' => $callSetId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('delete', array($params), "Google_Service_Genomics_Empty");
|
|
}
|
|
|
|
/**
|
|
* Gets a call set by ID. (callsets.get)
|
|
*
|
|
* @param string $callSetId The ID of the call set.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_CallSet
|
|
*/
|
|
public function get($callSetId, $optParams = array())
|
|
{
|
|
$params = array('callSetId' => $callSetId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('get', array($params), "Google_Service_Genomics_CallSet");
|
|
}
|
|
|
|
/**
|
|
* Updates a call set. This method supports patch semantics. (callsets.patch)
|
|
*
|
|
* @param string $callSetId The ID of the call set to be updated.
|
|
* @param Google_CallSet $postBody
|
|
* @param array $optParams Optional parameters.
|
|
*
|
|
* @opt_param string updateMask An optional mask specifying which fields to
|
|
* update. At this time, the only mutable field is name. The only acceptable
|
|
* value is "name". If unspecified, all mutable fields will be updated.
|
|
* @return Google_Service_Genomics_CallSet
|
|
*/
|
|
public function patch($callSetId, Google_Service_Genomics_CallSet $postBody, $optParams = array())
|
|
{
|
|
$params = array('callSetId' => $callSetId, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('patch', array($params), "Google_Service_Genomics_CallSet");
|
|
}
|
|
|
|
/**
|
|
* Gets a list of call sets matching the criteria. Implements [GlobalAllianceApi
|
|
* .searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resour
|
|
* ces/avro/variantmethods.avdl#L178). (callsets.search)
|
|
*
|
|
* @param Google_SearchCallSetsRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_SearchCallSetsResponse
|
|
*/
|
|
public function search(Google_Service_Genomics_SearchCallSetsRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('search', array($params), "Google_Service_Genomics_SearchCallSetsResponse");
|
|
}
|
|
}
|
|
|
|
/**
|
|
* The "datasets" collection of methods.
|
|
* Typical usage is:
|
|
* <code>
|
|
* $genomicsService = new Google_Service_Genomics(...);
|
|
* $datasets = $genomicsService->datasets;
|
|
* </code>
|
|
*/
|
|
class Google_Service_Genomics_Datasets_Resource extends Google_Service_Resource
|
|
{
|
|
|
|
/**
|
|
* Creates a new dataset. (datasets.create)
|
|
*
|
|
* @param Google_Dataset $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Dataset
|
|
*/
|
|
public function create(Google_Service_Genomics_Dataset $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('create', array($params), "Google_Service_Genomics_Dataset");
|
|
}
|
|
|
|
/**
|
|
* Deletes a dataset. (datasets.delete)
|
|
*
|
|
* @param string $datasetId The ID of the dataset to be deleted.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Empty
|
|
*/
|
|
public function delete($datasetId, $optParams = array())
|
|
{
|
|
$params = array('datasetId' => $datasetId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('delete', array($params), "Google_Service_Genomics_Empty");
|
|
}
|
|
|
|
/**
|
|
* Gets a dataset by ID. (datasets.get)
|
|
*
|
|
* @param string $datasetId The ID of the dataset.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Dataset
|
|
*/
|
|
public function get($datasetId, $optParams = array())
|
|
{
|
|
$params = array('datasetId' => $datasetId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('get', array($params), "Google_Service_Genomics_Dataset");
|
|
}
|
|
|
|
/**
|
|
* Gets the access control policy for the dataset. Is empty if the policy or the
|
|
* resource does not exist. See Getting a Policy for more information.
|
|
* (datasets.getIamPolicy)
|
|
*
|
|
* @param string $resource REQUIRED: The resource for which policy is being
|
|
* specified. Format is `datasets/`.
|
|
* @param Google_GetIamPolicyRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Policy
|
|
*/
|
|
public function getIamPolicy($resource, Google_Service_Genomics_GetIamPolicyRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('resource' => $resource, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('getIamPolicy', array($params), "Google_Service_Genomics_Policy");
|
|
}
|
|
|
|
/**
|
|
* Lists datasets within a project. (datasets.listDatasets)
|
|
*
|
|
* @param array $optParams Optional parameters.
|
|
*
|
|
* @opt_param string projectId Required. The project to list datasets for.
|
|
* @opt_param int pageSize The maximum number of results returned by this
|
|
* request. If unspecified, defaults to 50. The maximum value is 1024.
|
|
* @opt_param string pageToken The continuation token, which is used to page
|
|
* through large result sets. To get the next page of results, set this
|
|
* parameter to the value of `nextPageToken` from the previous response.
|
|
* @return Google_Service_Genomics_ListDatasetsResponse
|
|
*/
|
|
public function listDatasets($optParams = array())
|
|
{
|
|
$params = array();
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('list', array($params), "Google_Service_Genomics_ListDatasetsResponse");
|
|
}
|
|
|
|
/**
|
|
* Updates a dataset. This method supports patch semantics. (datasets.patch)
|
|
*
|
|
* @param string $datasetId The ID of the dataset to be updated.
|
|
* @param Google_Dataset $postBody
|
|
* @param array $optParams Optional parameters.
|
|
*
|
|
* @opt_param string updateMask An optional mask specifying which fields to
|
|
* update. At this time, the only mutable field is name. The only acceptable
|
|
* value is "name". If unspecified, all mutable fields will be updated.
|
|
* @return Google_Service_Genomics_Dataset
|
|
*/
|
|
public function patch($datasetId, Google_Service_Genomics_Dataset $postBody, $optParams = array())
|
|
{
|
|
$params = array('datasetId' => $datasetId, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('patch', array($params), "Google_Service_Genomics_Dataset");
|
|
}
|
|
|
|
/**
|
|
* Sets the access control policy on the specified dataset. Replaces any
|
|
* existing policy. See Setting a Policy for more information.
|
|
* (datasets.setIamPolicy)
|
|
*
|
|
* @param string $resource REQUIRED: The resource for which policy is being
|
|
* specified. Format is `datasets/`.
|
|
* @param Google_SetIamPolicyRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Policy
|
|
*/
|
|
public function setIamPolicy($resource, Google_Service_Genomics_SetIamPolicyRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('resource' => $resource, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('setIamPolicy', array($params), "Google_Service_Genomics_Policy");
|
|
}
|
|
|
|
/**
|
|
* Returns permissions that a caller has on the specified resource. See Testing
|
|
* Permissions for more information. (datasets.testIamPermissions)
|
|
*
|
|
* @param string $resource REQUIRED: The resource for which policy is being
|
|
* specified. Format is `datasets/`.
|
|
* @param Google_TestIamPermissionsRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_TestIamPermissionsResponse
|
|
*/
|
|
public function testIamPermissions($resource, Google_Service_Genomics_TestIamPermissionsRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('resource' => $resource, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('testIamPermissions', array($params), "Google_Service_Genomics_TestIamPermissionsResponse");
|
|
}
|
|
|
|
/**
|
|
* Undeletes a dataset by restoring a dataset which was deleted via this API.
|
|
* This operation is only possible for a week after the deletion occurred.
|
|
* (datasets.undelete)
|
|
*
|
|
* @param string $datasetId The ID of the dataset to be undeleted.
|
|
* @param Google_UndeleteDatasetRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Dataset
|
|
*/
|
|
public function undelete($datasetId, Google_Service_Genomics_UndeleteDatasetRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('datasetId' => $datasetId, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('undelete', array($params), "Google_Service_Genomics_Dataset");
|
|
}
|
|
}
|
|
|
|
/**
|
|
* The "operations" collection of methods.
|
|
* Typical usage is:
|
|
* <code>
|
|
* $genomicsService = new Google_Service_Genomics(...);
|
|
* $operations = $genomicsService->operations;
|
|
* </code>
|
|
*/
|
|
class Google_Service_Genomics_Operations_Resource extends Google_Service_Resource
|
|
{
|
|
|
|
/**
|
|
* Starts asynchronous cancellation on a long-running operation. The server
|
|
* makes a best effort to cancel the operation, but success is not guaranteed.
|
|
* Clients may use Operations.GetOperation or Operations.ListOperations to check
|
|
* whether the cancellation succeeded or the operation completed despite
|
|
* cancellation. (operations.cancel)
|
|
*
|
|
* @param string $name The name of the operation resource to be cancelled.
|
|
* @param Google_CancelOperationRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Empty
|
|
*/
|
|
public function cancel($name, Google_Service_Genomics_CancelOperationRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('name' => $name, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('cancel', array($params), "Google_Service_Genomics_Empty");
|
|
}
|
|
|
|
/**
|
|
* This method is not implemented. To cancel an operation, please use
|
|
* Operations.CancelOperation. (operations.delete)
|
|
*
|
|
* @param string $name The name of the operation resource to be deleted.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Empty
|
|
*/
|
|
public function delete($name, $optParams = array())
|
|
{
|
|
$params = array('name' => $name);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('delete', array($params), "Google_Service_Genomics_Empty");
|
|
}
|
|
|
|
/**
|
|
* Gets the latest state of a long-running operation. Clients can use this
|
|
* method to poll the operation result at intervals as recommended by the API
|
|
* service. (operations.get)
|
|
*
|
|
* @param string $name The name of the operation resource.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Operation
|
|
*/
|
|
public function get($name, $optParams = array())
|
|
{
|
|
$params = array('name' => $name);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('get', array($params), "Google_Service_Genomics_Operation");
|
|
}
|
|
|
|
/**
|
|
* Lists operations that match the specified filter in the request.
|
|
* (operations.listOperations)
|
|
*
|
|
* @param string $name The name of the operation collection.
|
|
* @param array $optParams Optional parameters.
|
|
*
|
|
* @opt_param string filter A string for filtering Operations. The following
|
|
* filter fields are supported: * projectId: Required. Corresponds to
|
|
* OperationMetadata.projectId. * createTime: The time this job was created, in
|
|
* seconds from the [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use
|
|
* `>=` and/or `= 1432140000` * `projectId = my-project AND createTime >=
|
|
* 1432140000 AND createTime <= 1432150000 AND status = RUNNING`
|
|
* @opt_param string pageToken The standard list page token.
|
|
* @opt_param int pageSize The maximum number of results to return. If
|
|
* unspecified, defaults to 256. The maximum value is 2048.
|
|
* @return Google_Service_Genomics_ListOperationsResponse
|
|
*/
|
|
public function listOperations($name, $optParams = array())
|
|
{
|
|
$params = array('name' => $name);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('list', array($params), "Google_Service_Genomics_ListOperationsResponse");
|
|
}
|
|
}
|
|
|
|
/**
|
|
* The "readgroupsets" collection of methods.
|
|
* Typical usage is:
|
|
* <code>
|
|
* $genomicsService = new Google_Service_Genomics(...);
|
|
* $readgroupsets = $genomicsService->readgroupsets;
|
|
* </code>
|
|
*/
|
|
class Google_Service_Genomics_Readgroupsets_Resource extends Google_Service_Resource
|
|
{
|
|
|
|
/**
|
|
* Deletes a read group set. (readgroupsets.delete)
|
|
*
|
|
* @param string $readGroupSetId The ID of the read group set to be deleted. The
|
|
* caller must have WRITE permissions to the dataset associated with this read
|
|
* group set.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Empty
|
|
*/
|
|
public function delete($readGroupSetId, $optParams = array())
|
|
{
|
|
$params = array('readGroupSetId' => $readGroupSetId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('delete', array($params), "Google_Service_Genomics_Empty");
|
|
}
|
|
|
|
/**
|
|
* Exports a read group set to a BAM file in Google Cloud Storage. Note that
|
|
* currently there may be some differences between exported BAM files and the
|
|
* original BAM file at the time of import. See
|
|
* [ImportReadGroupSets](google.genomics.v1.ReadServiceV1.ImportReadGroupSets)
|
|
* for caveats. (readgroupsets.export)
|
|
*
|
|
* @param string $readGroupSetId Required. The ID of the read group set to
|
|
* export.
|
|
* @param Google_ExportReadGroupSetRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Operation
|
|
*/
|
|
public function export($readGroupSetId, Google_Service_Genomics_ExportReadGroupSetRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('readGroupSetId' => $readGroupSetId, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('export', array($params), "Google_Service_Genomics_Operation");
|
|
}
|
|
|
|
/**
|
|
* Gets a read group set by ID. (readgroupsets.get)
|
|
*
|
|
* @param string $readGroupSetId The ID of the read group set.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_ReadGroupSet
|
|
*/
|
|
public function get($readGroupSetId, $optParams = array())
|
|
{
|
|
$params = array('readGroupSetId' => $readGroupSetId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('get', array($params), "Google_Service_Genomics_ReadGroupSet");
|
|
}
|
|
|
|
/**
|
|
* Creates read group sets by asynchronously importing the provided information.
|
|
* The caller must have WRITE permissions to the dataset. ## Notes on
|
|
* [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import - Tags will be
|
|
* converted to strings - tag types are not preserved - Comments (`@CO`) in the
|
|
* input file header will not be preserved - Original header order of references
|
|
* (`@SQ`) will not be preserved - Any reverse stranded unmapped reads will be
|
|
* reverse complemented, and their qualities (and "BQ" tag, if any) will be
|
|
* reversed - Unmapped reads will be stripped of positional information
|
|
* (reference name and position) (readgroupsets.import)
|
|
*
|
|
* @param Google_ImportReadGroupSetsRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Operation
|
|
*/
|
|
public function import(Google_Service_Genomics_ImportReadGroupSetsRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('import', array($params), "Google_Service_Genomics_Operation");
|
|
}
|
|
|
|
/**
|
|
* Updates a read group set. This method supports patch semantics.
|
|
* (readgroupsets.patch)
|
|
*
|
|
* @param string $readGroupSetId The ID of the read group set to be updated. The
|
|
* caller must have WRITE permissions to the dataset associated with this read
|
|
* group set.
|
|
* @param Google_ReadGroupSet $postBody
|
|
* @param array $optParams Optional parameters.
|
|
*
|
|
* @opt_param string updateMask An optional mask specifying which fields to
|
|
* update. At this time, mutable fields are referenceSetId and name. Acceptable
|
|
* values are "referenceSetId" and "name". If unspecified, all mutable fields
|
|
* will be updated.
|
|
* @return Google_Service_Genomics_ReadGroupSet
|
|
*/
|
|
public function patch($readGroupSetId, Google_Service_Genomics_ReadGroupSet $postBody, $optParams = array())
|
|
{
|
|
$params = array('readGroupSetId' => $readGroupSetId, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('patch', array($params), "Google_Service_Genomics_ReadGroupSet");
|
|
}
|
|
|
|
/**
|
|
* Searches for read group sets matching the criteria. Implements [GlobalAllianc
|
|
* eApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/ma
|
|
* in/resources/avro/readmethods.avdl#L135). (readgroupsets.search)
|
|
*
|
|
* @param Google_SearchReadGroupSetsRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_SearchReadGroupSetsResponse
|
|
*/
|
|
public function search(Google_Service_Genomics_SearchReadGroupSetsRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('search', array($params), "Google_Service_Genomics_SearchReadGroupSetsResponse");
|
|
}
|
|
}
|
|
|
|
/**
|
|
* The "coveragebuckets" collection of methods.
|
|
* Typical usage is:
|
|
* <code>
|
|
* $genomicsService = new Google_Service_Genomics(...);
|
|
* $coveragebuckets = $genomicsService->coveragebuckets;
|
|
* </code>
|
|
*/
|
|
class Google_Service_Genomics_ReadgroupsetsCoveragebuckets_Resource extends Google_Service_Resource
|
|
{
|
|
|
|
/**
|
|
* Lists fixed width coverage buckets for a read group set, each of which
|
|
* correspond to a range of a reference sequence. Each bucket summarizes
|
|
* coverage information across its corresponding genomic range. Coverage is
|
|
* defined as the number of reads which are aligned to a given base in the
|
|
* reference sequence. Coverage buckets are available at several precomputed
|
|
* bucket widths, enabling retrieval of various coverage 'zoom levels'. The
|
|
* caller must have READ permissions for the target read group set.
|
|
* (coveragebuckets.listReadgroupsetsCoveragebuckets)
|
|
*
|
|
* @param string $readGroupSetId Required. The ID of the read group set over
|
|
* which coverage is requested.
|
|
* @param array $optParams Optional parameters.
|
|
*
|
|
* @opt_param string end The end position of the range on the reference, 0-based
|
|
* exclusive. If specified, `referenceName` must also be specified. If unset or
|
|
* 0, defaults to the length of the reference.
|
|
* @opt_param int pageSize The maximum number of results to return in a single
|
|
* page. If unspecified, defaults to 1024. The maximum value is 2048.
|
|
* @opt_param string start The start position of the range on the reference,
|
|
* 0-based inclusive. If specified, `referenceName` must also be specified.
|
|
* Defaults to 0.
|
|
* @opt_param string pageToken The continuation token, which is used to page
|
|
* through large result sets. To get the next page of results, set this
|
|
* parameter to the value of `nextPageToken` from the previous response.
|
|
* @opt_param string targetBucketWidth The desired width of each reported
|
|
* coverage bucket in base pairs. This will be rounded down to the nearest
|
|
* precomputed bucket width; the value of which is returned as `bucketWidth` in
|
|
* the response. Defaults to infinity (each bucket spans an entire reference
|
|
* sequence) or the length of the target range, if specified. The smallest
|
|
* precomputed `bucketWidth` is currently 2048 base pairs; this is subject to
|
|
* change.
|
|
* @opt_param string referenceName The name of the reference to query, within
|
|
* the reference set associated with this query. Optional.
|
|
* @return Google_Service_Genomics_ListCoverageBucketsResponse
|
|
*/
|
|
public function listReadgroupsetsCoveragebuckets($readGroupSetId, $optParams = array())
|
|
{
|
|
$params = array('readGroupSetId' => $readGroupSetId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('list', array($params), "Google_Service_Genomics_ListCoverageBucketsResponse");
|
|
}
|
|
}
|
|
|
|
/**
|
|
* The "reads" collection of methods.
|
|
* Typical usage is:
|
|
* <code>
|
|
* $genomicsService = new Google_Service_Genomics(...);
|
|
* $reads = $genomicsService->reads;
|
|
* </code>
|
|
*/
|
|
class Google_Service_Genomics_Reads_Resource extends Google_Service_Resource
|
|
{
|
|
|
|
/**
|
|
* Gets a list of reads for one or more read group sets. Reads search operates
|
|
* over a genomic coordinate space of reference sequence & position defined over
|
|
* the reference sequences to which the requested read group sets are aligned.
|
|
* If a target positional range is specified, search returns all reads whose
|
|
* alignment to the reference genome overlap the range. A query which specifies
|
|
* only read group set IDs yields all reads in those read group sets, including
|
|
* unmapped reads. All reads returned (including reads on subsequent pages) are
|
|
* ordered by genomic coordinate (reference sequence & position). Reads with
|
|
* equivalent genomic coordinates are returned in a deterministic order.
|
|
* Implements [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/b
|
|
* lob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85). (reads.search)
|
|
*
|
|
* @param Google_SearchReadsRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_SearchReadsResponse
|
|
*/
|
|
public function search(Google_Service_Genomics_SearchReadsRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('search', array($params), "Google_Service_Genomics_SearchReadsResponse");
|
|
}
|
|
}
|
|
|
|
/**
|
|
* The "references" collection of methods.
|
|
* Typical usage is:
|
|
* <code>
|
|
* $genomicsService = new Google_Service_Genomics(...);
|
|
* $references = $genomicsService->references;
|
|
* </code>
|
|
*/
|
|
class Google_Service_Genomics_References_Resource extends Google_Service_Resource
|
|
{
|
|
|
|
/**
|
|
* Gets a reference. Implements [GlobalAllianceApi.getReference](https://github.
|
|
* com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L
|
|
* 158). (references.get)
|
|
*
|
|
* @param string $referenceId The ID of the reference.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Reference
|
|
*/
|
|
public function get($referenceId, $optParams = array())
|
|
{
|
|
$params = array('referenceId' => $referenceId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('get', array($params), "Google_Service_Genomics_Reference");
|
|
}
|
|
|
|
/**
|
|
* Searches for references which match the given criteria. Implements [GlobalAll
|
|
* ianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/m
|
|
* ain/resources/avro/referencemethods.avdl#L146). (references.search)
|
|
*
|
|
* @param Google_SearchReferencesRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_SearchReferencesResponse
|
|
*/
|
|
public function search(Google_Service_Genomics_SearchReferencesRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('search', array($params), "Google_Service_Genomics_SearchReferencesResponse");
|
|
}
|
|
}
|
|
|
|
/**
|
|
* The "bases" collection of methods.
|
|
* Typical usage is:
|
|
* <code>
|
|
* $genomicsService = new Google_Service_Genomics(...);
|
|
* $bases = $genomicsService->bases;
|
|
* </code>
|
|
*/
|
|
class Google_Service_Genomics_ReferencesBases_Resource extends Google_Service_Resource
|
|
{
|
|
|
|
/**
|
|
* Lists the bases in a reference, optionally restricted to a range. Implements
|
|
* [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v
|
|
* 0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
|
|
* (bases.listReferencesBases)
|
|
*
|
|
* @param string $referenceId The ID of the reference.
|
|
* @param array $optParams Optional parameters.
|
|
*
|
|
* @opt_param string start The start position (0-based) of this query. Defaults
|
|
* to 0.
|
|
* @opt_param string end The end position (0-based, exclusive) of this query.
|
|
* Defaults to the length of this reference.
|
|
* @opt_param int pageSize Specifies the maximum number of bases to return in a
|
|
* single page.
|
|
* @opt_param string pageToken The continuation token, which is used to page
|
|
* through large result sets. To get the next page of results, set this
|
|
* parameter to the value of `nextPageToken` from the previous response.
|
|
* @return Google_Service_Genomics_ListBasesResponse
|
|
*/
|
|
public function listReferencesBases($referenceId, $optParams = array())
|
|
{
|
|
$params = array('referenceId' => $referenceId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('list', array($params), "Google_Service_Genomics_ListBasesResponse");
|
|
}
|
|
}
|
|
|
|
/**
|
|
* The "referencesets" collection of methods.
|
|
* Typical usage is:
|
|
* <code>
|
|
* $genomicsService = new Google_Service_Genomics(...);
|
|
* $referencesets = $genomicsService->referencesets;
|
|
* </code>
|
|
*/
|
|
class Google_Service_Genomics_Referencesets_Resource extends Google_Service_Resource
|
|
{
|
|
|
|
/**
|
|
* Gets a reference set. Implements [GlobalAllianceApi.getReferenceSet](https://
|
|
* github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods
|
|
* .avdl#L83). (referencesets.get)
|
|
*
|
|
* @param string $referenceSetId The ID of the reference set.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_ReferenceSet
|
|
*/
|
|
public function get($referenceSetId, $optParams = array())
|
|
{
|
|
$params = array('referenceSetId' => $referenceSetId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('get', array($params), "Google_Service_Genomics_ReferenceSet");
|
|
}
|
|
|
|
/**
|
|
* Searches for reference sets which match the given criteria. Implements [Globa
|
|
* lAllianceApi.searchReferenceSets](http://ga4gh.org/documentation/api/v0.5.1/g
|
|
* a4gh_api.html#/schema/org.ga4gh.searchReferenceSets). (referencesets.search)
|
|
*
|
|
* @param Google_SearchReferenceSetsRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_SearchReferenceSetsResponse
|
|
*/
|
|
public function search(Google_Service_Genomics_SearchReferenceSetsRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('search', array($params), "Google_Service_Genomics_SearchReferenceSetsResponse");
|
|
}
|
|
}
|
|
|
|
/**
|
|
* The "variants" collection of methods.
|
|
* Typical usage is:
|
|
* <code>
|
|
* $genomicsService = new Google_Service_Genomics(...);
|
|
* $variants = $genomicsService->variants;
|
|
* </code>
|
|
*/
|
|
class Google_Service_Genomics_Variants_Resource extends Google_Service_Resource
|
|
{
|
|
|
|
/**
|
|
* Creates a new variant. (variants.create)
|
|
*
|
|
* @param Google_Variant $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Variant
|
|
*/
|
|
public function create(Google_Service_Genomics_Variant $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('create', array($params), "Google_Service_Genomics_Variant");
|
|
}
|
|
|
|
/**
|
|
* Deletes a variant. (variants.delete)
|
|
*
|
|
* @param string $variantId The ID of the variant to be deleted.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Empty
|
|
*/
|
|
public function delete($variantId, $optParams = array())
|
|
{
|
|
$params = array('variantId' => $variantId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('delete', array($params), "Google_Service_Genomics_Empty");
|
|
}
|
|
|
|
/**
|
|
* Gets a variant by ID. (variants.get)
|
|
*
|
|
* @param string $variantId The ID of the variant.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Variant
|
|
*/
|
|
public function get($variantId, $optParams = array())
|
|
{
|
|
$params = array('variantId' => $variantId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('get', array($params), "Google_Service_Genomics_Variant");
|
|
}
|
|
|
|
/**
|
|
* Creates variant data by asynchronously importing the provided information.
|
|
* The variants for import will be merged with any existing variant that matches
|
|
* its reference sequence, start, end, reference bases, and alternative bases.
|
|
* If no such variant exists, a new one will be created. When variants are
|
|
* merged, the call information from the new variant is added to the existing
|
|
* variant, and other fields (such as key/value pairs) are discarded. In
|
|
* particular, this means for merged VCF variants that have conflicting INFO
|
|
* fields, some data will be arbitrarily discarded. As a special case, for
|
|
* single-sample VCF files, QUAL and FILTER fields will be moved to the call
|
|
* level; these are sometimes interpreted in a call-specific context. Imported
|
|
* VCF headers are appended to the metadata already in a variant set.
|
|
* (variants.import)
|
|
*
|
|
* @param Google_ImportVariantsRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Operation
|
|
*/
|
|
public function import(Google_Service_Genomics_ImportVariantsRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('import', array($params), "Google_Service_Genomics_Operation");
|
|
}
|
|
|
|
/**
|
|
* Updates a variant. This method supports patch semantics. Returns the modified
|
|
* variant without its calls. (variants.patch)
|
|
*
|
|
* @param string $variantId The ID of the variant to be updated.
|
|
* @param Google_Variant $postBody
|
|
* @param array $optParams Optional parameters.
|
|
*
|
|
* @opt_param string updateMask An optional mask specifying which fields to
|
|
* update. At this time, mutable fields are names and info. Acceptable values
|
|
* are "names" and "info". If unspecified, all mutable fields will be updated.
|
|
* @return Google_Service_Genomics_Variant
|
|
*/
|
|
public function patch($variantId, Google_Service_Genomics_Variant $postBody, $optParams = array())
|
|
{
|
|
$params = array('variantId' => $variantId, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('patch', array($params), "Google_Service_Genomics_Variant");
|
|
}
|
|
|
|
/**
|
|
* Gets a list of variants matching the criteria. Implements [GlobalAllianceApi.
|
|
* searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resourc
|
|
* es/avro/variantmethods.avdl#L126). (variants.search)
|
|
*
|
|
* @param Google_SearchVariantsRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_SearchVariantsResponse
|
|
*/
|
|
public function search(Google_Service_Genomics_SearchVariantsRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('search', array($params), "Google_Service_Genomics_SearchVariantsResponse");
|
|
}
|
|
}
|
|
|
|
/**
|
|
* The "variantsets" collection of methods.
|
|
* Typical usage is:
|
|
* <code>
|
|
* $genomicsService = new Google_Service_Genomics(...);
|
|
* $variantsets = $genomicsService->variantsets;
|
|
* </code>
|
|
*/
|
|
class Google_Service_Genomics_Variantsets_Resource extends Google_Service_Resource
|
|
{
|
|
|
|
/**
|
|
* Creates a new variant set. The provided variant set must have a valid
|
|
* `datasetId` set - all other fields are optional. Note that the `id` field
|
|
* will be ignored, as this is assigned by the server. (variantsets.create)
|
|
*
|
|
* @param Google_VariantSet $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_VariantSet
|
|
*/
|
|
public function create(Google_Service_Genomics_VariantSet $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('create', array($params), "Google_Service_Genomics_VariantSet");
|
|
}
|
|
|
|
/**
|
|
* Deletes the contents of a variant set. The variant set object is not deleted.
|
|
* (variantsets.delete)
|
|
*
|
|
* @param string $variantSetId The ID of the variant set to be deleted.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Empty
|
|
*/
|
|
public function delete($variantSetId, $optParams = array())
|
|
{
|
|
$params = array('variantSetId' => $variantSetId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('delete', array($params), "Google_Service_Genomics_Empty");
|
|
}
|
|
|
|
/**
|
|
* Exports variant set data to an external destination. (variantsets.export)
|
|
*
|
|
* @param string $variantSetId Required. The ID of the variant set that contains
|
|
* variant data which should be exported. The caller must have READ access to
|
|
* this variant set.
|
|
* @param Google_ExportVariantSetRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_Operation
|
|
*/
|
|
public function export($variantSetId, Google_Service_Genomics_ExportVariantSetRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('variantSetId' => $variantSetId, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('export', array($params), "Google_Service_Genomics_Operation");
|
|
}
|
|
|
|
/**
|
|
* Gets a variant set by ID. (variantsets.get)
|
|
*
|
|
* @param string $variantSetId Required. The ID of the variant set.
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_VariantSet
|
|
*/
|
|
public function get($variantSetId, $optParams = array())
|
|
{
|
|
$params = array('variantSetId' => $variantSetId);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('get', array($params), "Google_Service_Genomics_VariantSet");
|
|
}
|
|
|
|
/**
|
|
* Updates a variant set. This method supports patch semantics.
|
|
* (variantsets.patch)
|
|
*
|
|
* @param string $variantSetId The ID of the variant to be updated (must already
|
|
* exist).
|
|
* @param Google_VariantSet $postBody
|
|
* @param array $optParams Optional parameters.
|
|
*
|
|
* @opt_param string updateMask An optional mask specifying which fields to
|
|
* update. At this time, the only mutable field is metadata. The only acceptable
|
|
* value is "metadata". If unspecified, all mutable fields will be updated.
|
|
* @return Google_Service_Genomics_VariantSet
|
|
*/
|
|
public function patch($variantSetId, Google_Service_Genomics_VariantSet $postBody, $optParams = array())
|
|
{
|
|
$params = array('variantSetId' => $variantSetId, 'postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('patch', array($params), "Google_Service_Genomics_VariantSet");
|
|
}
|
|
|
|
/**
|
|
* Returns a list of all variant sets matching search criteria. Implements [Glob
|
|
* alAllianceApi.searchVariantSets](https://github.com/ga4gh/schemas/blob/v0.5.1
|
|
* /src/main/resources/avro/variantmethods.avdl#L49). (variantsets.search)
|
|
*
|
|
* @param Google_SearchVariantSetsRequest $postBody
|
|
* @param array $optParams Optional parameters.
|
|
* @return Google_Service_Genomics_SearchVariantSetsResponse
|
|
*/
|
|
public function search(Google_Service_Genomics_SearchVariantSetsRequest $postBody, $optParams = array())
|
|
{
|
|
$params = array('postBody' => $postBody);
|
|
$params = array_merge($params, $optParams);
|
|
return $this->call('search', array($params), "Google_Service_Genomics_SearchVariantSetsResponse");
|
|
}
|
|
}
|
|
|
|
|
|
|
|
|
|
class Google_Service_Genomics_Binding extends Google_Collection
|
|
{
|
|
protected $collection_key = 'members';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $members;
|
|
public $role;
|
|
|
|
|
|
public function setMembers($members)
|
|
{
|
|
$this->members = $members;
|
|
}
|
|
public function getMembers()
|
|
{
|
|
return $this->members;
|
|
}
|
|
public function setRole($role)
|
|
{
|
|
$this->role = $role;
|
|
}
|
|
public function getRole()
|
|
{
|
|
return $this->role;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_CallSet extends Google_Collection
|
|
{
|
|
protected $collection_key = 'variantSetIds';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $created;
|
|
public $id;
|
|
public $info;
|
|
public $name;
|
|
public $sampleId;
|
|
public $variantSetIds;
|
|
|
|
|
|
public function setCreated($created)
|
|
{
|
|
$this->created = $created;
|
|
}
|
|
public function getCreated()
|
|
{
|
|
return $this->created;
|
|
}
|
|
public function setId($id)
|
|
{
|
|
$this->id = $id;
|
|
}
|
|
public function getId()
|
|
{
|
|
return $this->id;
|
|
}
|
|
public function setInfo($info)
|
|
{
|
|
$this->info = $info;
|
|
}
|
|
public function getInfo()
|
|
{
|
|
return $this->info;
|
|
}
|
|
public function setName($name)
|
|
{
|
|
$this->name = $name;
|
|
}
|
|
public function getName()
|
|
{
|
|
return $this->name;
|
|
}
|
|
public function setSampleId($sampleId)
|
|
{
|
|
$this->sampleId = $sampleId;
|
|
}
|
|
public function getSampleId()
|
|
{
|
|
return $this->sampleId;
|
|
}
|
|
public function setVariantSetIds($variantSetIds)
|
|
{
|
|
$this->variantSetIds = $variantSetIds;
|
|
}
|
|
public function getVariantSetIds()
|
|
{
|
|
return $this->variantSetIds;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_CallSetInfo extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_CancelOperationRequest extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_CigarUnit extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $operation;
|
|
public $operationLength;
|
|
public $referenceSequence;
|
|
|
|
|
|
public function setOperation($operation)
|
|
{
|
|
$this->operation = $operation;
|
|
}
|
|
public function getOperation()
|
|
{
|
|
return $this->operation;
|
|
}
|
|
public function setOperationLength($operationLength)
|
|
{
|
|
$this->operationLength = $operationLength;
|
|
}
|
|
public function getOperationLength()
|
|
{
|
|
return $this->operationLength;
|
|
}
|
|
public function setReferenceSequence($referenceSequence)
|
|
{
|
|
$this->referenceSequence = $referenceSequence;
|
|
}
|
|
public function getReferenceSequence()
|
|
{
|
|
return $this->referenceSequence;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_CoverageBucket extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $meanCoverage;
|
|
protected $rangeType = 'Google_Service_Genomics_Range';
|
|
protected $rangeDataType = '';
|
|
|
|
|
|
public function setMeanCoverage($meanCoverage)
|
|
{
|
|
$this->meanCoverage = $meanCoverage;
|
|
}
|
|
public function getMeanCoverage()
|
|
{
|
|
return $this->meanCoverage;
|
|
}
|
|
public function setRange(Google_Service_Genomics_Range $range)
|
|
{
|
|
$this->range = $range;
|
|
}
|
|
public function getRange()
|
|
{
|
|
return $this->range;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_Dataset extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $createTime;
|
|
public $id;
|
|
public $name;
|
|
public $projectId;
|
|
|
|
|
|
public function setCreateTime($createTime)
|
|
{
|
|
$this->createTime = $createTime;
|
|
}
|
|
public function getCreateTime()
|
|
{
|
|
return $this->createTime;
|
|
}
|
|
public function setId($id)
|
|
{
|
|
$this->id = $id;
|
|
}
|
|
public function getId()
|
|
{
|
|
return $this->id;
|
|
}
|
|
public function setName($name)
|
|
{
|
|
$this->name = $name;
|
|
}
|
|
public function getName()
|
|
{
|
|
return $this->name;
|
|
}
|
|
public function setProjectId($projectId)
|
|
{
|
|
$this->projectId = $projectId;
|
|
}
|
|
public function getProjectId()
|
|
{
|
|
return $this->projectId;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_Empty extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_Experiment extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $instrumentModel;
|
|
public $libraryId;
|
|
public $platformUnit;
|
|
public $sequencingCenter;
|
|
|
|
|
|
public function setInstrumentModel($instrumentModel)
|
|
{
|
|
$this->instrumentModel = $instrumentModel;
|
|
}
|
|
public function getInstrumentModel()
|
|
{
|
|
return $this->instrumentModel;
|
|
}
|
|
public function setLibraryId($libraryId)
|
|
{
|
|
$this->libraryId = $libraryId;
|
|
}
|
|
public function getLibraryId()
|
|
{
|
|
return $this->libraryId;
|
|
}
|
|
public function setPlatformUnit($platformUnit)
|
|
{
|
|
$this->platformUnit = $platformUnit;
|
|
}
|
|
public function getPlatformUnit()
|
|
{
|
|
return $this->platformUnit;
|
|
}
|
|
public function setSequencingCenter($sequencingCenter)
|
|
{
|
|
$this->sequencingCenter = $sequencingCenter;
|
|
}
|
|
public function getSequencingCenter()
|
|
{
|
|
return $this->sequencingCenter;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ExportReadGroupSetRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'referenceNames';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $exportUri;
|
|
public $projectId;
|
|
public $referenceNames;
|
|
|
|
|
|
public function setExportUri($exportUri)
|
|
{
|
|
$this->exportUri = $exportUri;
|
|
}
|
|
public function getExportUri()
|
|
{
|
|
return $this->exportUri;
|
|
}
|
|
public function setProjectId($projectId)
|
|
{
|
|
$this->projectId = $projectId;
|
|
}
|
|
public function getProjectId()
|
|
{
|
|
return $this->projectId;
|
|
}
|
|
public function setReferenceNames($referenceNames)
|
|
{
|
|
$this->referenceNames = $referenceNames;
|
|
}
|
|
public function getReferenceNames()
|
|
{
|
|
return $this->referenceNames;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ExportVariantSetRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'callSetIds';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $bigqueryDataset;
|
|
public $bigqueryTable;
|
|
public $callSetIds;
|
|
public $format;
|
|
public $projectId;
|
|
|
|
|
|
public function setBigqueryDataset($bigqueryDataset)
|
|
{
|
|
$this->bigqueryDataset = $bigqueryDataset;
|
|
}
|
|
public function getBigqueryDataset()
|
|
{
|
|
return $this->bigqueryDataset;
|
|
}
|
|
public function setBigqueryTable($bigqueryTable)
|
|
{
|
|
$this->bigqueryTable = $bigqueryTable;
|
|
}
|
|
public function getBigqueryTable()
|
|
{
|
|
return $this->bigqueryTable;
|
|
}
|
|
public function setCallSetIds($callSetIds)
|
|
{
|
|
$this->callSetIds = $callSetIds;
|
|
}
|
|
public function getCallSetIds()
|
|
{
|
|
return $this->callSetIds;
|
|
}
|
|
public function setFormat($format)
|
|
{
|
|
$this->format = $format;
|
|
}
|
|
public function getFormat()
|
|
{
|
|
return $this->format;
|
|
}
|
|
public function setProjectId($projectId)
|
|
{
|
|
$this->projectId = $projectId;
|
|
}
|
|
public function getProjectId()
|
|
{
|
|
return $this->projectId;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_GetIamPolicyRequest extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_ImportReadGroupSetsRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'sourceUris';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $datasetId;
|
|
public $partitionStrategy;
|
|
public $referenceSetId;
|
|
public $sourceUris;
|
|
|
|
|
|
public function setDatasetId($datasetId)
|
|
{
|
|
$this->datasetId = $datasetId;
|
|
}
|
|
public function getDatasetId()
|
|
{
|
|
return $this->datasetId;
|
|
}
|
|
public function setPartitionStrategy($partitionStrategy)
|
|
{
|
|
$this->partitionStrategy = $partitionStrategy;
|
|
}
|
|
public function getPartitionStrategy()
|
|
{
|
|
return $this->partitionStrategy;
|
|
}
|
|
public function setReferenceSetId($referenceSetId)
|
|
{
|
|
$this->referenceSetId = $referenceSetId;
|
|
}
|
|
public function getReferenceSetId()
|
|
{
|
|
return $this->referenceSetId;
|
|
}
|
|
public function setSourceUris($sourceUris)
|
|
{
|
|
$this->sourceUris = $sourceUris;
|
|
}
|
|
public function getSourceUris()
|
|
{
|
|
return $this->sourceUris;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ImportReadGroupSetsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'readGroupSetIds';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $readGroupSetIds;
|
|
|
|
|
|
public function setReadGroupSetIds($readGroupSetIds)
|
|
{
|
|
$this->readGroupSetIds = $readGroupSetIds;
|
|
}
|
|
public function getReadGroupSetIds()
|
|
{
|
|
return $this->readGroupSetIds;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ImportVariantsRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'sourceUris';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $format;
|
|
public $normalizeReferenceNames;
|
|
public $sourceUris;
|
|
public $variantSetId;
|
|
|
|
|
|
public function setFormat($format)
|
|
{
|
|
$this->format = $format;
|
|
}
|
|
public function getFormat()
|
|
{
|
|
return $this->format;
|
|
}
|
|
public function setNormalizeReferenceNames($normalizeReferenceNames)
|
|
{
|
|
$this->normalizeReferenceNames = $normalizeReferenceNames;
|
|
}
|
|
public function getNormalizeReferenceNames()
|
|
{
|
|
return $this->normalizeReferenceNames;
|
|
}
|
|
public function setSourceUris($sourceUris)
|
|
{
|
|
$this->sourceUris = $sourceUris;
|
|
}
|
|
public function getSourceUris()
|
|
{
|
|
return $this->sourceUris;
|
|
}
|
|
public function setVariantSetId($variantSetId)
|
|
{
|
|
$this->variantSetId = $variantSetId;
|
|
}
|
|
public function getVariantSetId()
|
|
{
|
|
return $this->variantSetId;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ImportVariantsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'callSetIds';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $callSetIds;
|
|
|
|
|
|
public function setCallSetIds($callSetIds)
|
|
{
|
|
$this->callSetIds = $callSetIds;
|
|
}
|
|
public function getCallSetIds()
|
|
{
|
|
return $this->callSetIds;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_LinearAlignment extends Google_Collection
|
|
{
|
|
protected $collection_key = 'cigar';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
protected $cigarType = 'Google_Service_Genomics_CigarUnit';
|
|
protected $cigarDataType = 'array';
|
|
public $mappingQuality;
|
|
protected $positionType = 'Google_Service_Genomics_Position';
|
|
protected $positionDataType = '';
|
|
|
|
|
|
public function setCigar($cigar)
|
|
{
|
|
$this->cigar = $cigar;
|
|
}
|
|
public function getCigar()
|
|
{
|
|
return $this->cigar;
|
|
}
|
|
public function setMappingQuality($mappingQuality)
|
|
{
|
|
$this->mappingQuality = $mappingQuality;
|
|
}
|
|
public function getMappingQuality()
|
|
{
|
|
return $this->mappingQuality;
|
|
}
|
|
public function setPosition(Google_Service_Genomics_Position $position)
|
|
{
|
|
$this->position = $position;
|
|
}
|
|
public function getPosition()
|
|
{
|
|
return $this->position;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ListBasesResponse extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $nextPageToken;
|
|
public $offset;
|
|
public $sequence;
|
|
|
|
|
|
public function setNextPageToken($nextPageToken)
|
|
{
|
|
$this->nextPageToken = $nextPageToken;
|
|
}
|
|
public function getNextPageToken()
|
|
{
|
|
return $this->nextPageToken;
|
|
}
|
|
public function setOffset($offset)
|
|
{
|
|
$this->offset = $offset;
|
|
}
|
|
public function getOffset()
|
|
{
|
|
return $this->offset;
|
|
}
|
|
public function setSequence($sequence)
|
|
{
|
|
$this->sequence = $sequence;
|
|
}
|
|
public function getSequence()
|
|
{
|
|
return $this->sequence;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ListCoverageBucketsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'coverageBuckets';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $bucketWidth;
|
|
protected $coverageBucketsType = 'Google_Service_Genomics_CoverageBucket';
|
|
protected $coverageBucketsDataType = 'array';
|
|
public $nextPageToken;
|
|
|
|
|
|
public function setBucketWidth($bucketWidth)
|
|
{
|
|
$this->bucketWidth = $bucketWidth;
|
|
}
|
|
public function getBucketWidth()
|
|
{
|
|
return $this->bucketWidth;
|
|
}
|
|
public function setCoverageBuckets($coverageBuckets)
|
|
{
|
|
$this->coverageBuckets = $coverageBuckets;
|
|
}
|
|
public function getCoverageBuckets()
|
|
{
|
|
return $this->coverageBuckets;
|
|
}
|
|
public function setNextPageToken($nextPageToken)
|
|
{
|
|
$this->nextPageToken = $nextPageToken;
|
|
}
|
|
public function getNextPageToken()
|
|
{
|
|
return $this->nextPageToken;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ListDatasetsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'datasets';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
protected $datasetsType = 'Google_Service_Genomics_Dataset';
|
|
protected $datasetsDataType = 'array';
|
|
public $nextPageToken;
|
|
|
|
|
|
public function setDatasets($datasets)
|
|
{
|
|
$this->datasets = $datasets;
|
|
}
|
|
public function getDatasets()
|
|
{
|
|
return $this->datasets;
|
|
}
|
|
public function setNextPageToken($nextPageToken)
|
|
{
|
|
$this->nextPageToken = $nextPageToken;
|
|
}
|
|
public function getNextPageToken()
|
|
{
|
|
return $this->nextPageToken;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ListOperationsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'operations';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $nextPageToken;
|
|
protected $operationsType = 'Google_Service_Genomics_Operation';
|
|
protected $operationsDataType = 'array';
|
|
|
|
|
|
public function setNextPageToken($nextPageToken)
|
|
{
|
|
$this->nextPageToken = $nextPageToken;
|
|
}
|
|
public function getNextPageToken()
|
|
{
|
|
return $this->nextPageToken;
|
|
}
|
|
public function setOperations($operations)
|
|
{
|
|
$this->operations = $operations;
|
|
}
|
|
public function getOperations()
|
|
{
|
|
return $this->operations;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_Operation extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $done;
|
|
protected $errorType = 'Google_Service_Genomics_Status';
|
|
protected $errorDataType = '';
|
|
public $metadata;
|
|
public $name;
|
|
public $response;
|
|
|
|
|
|
public function setDone($done)
|
|
{
|
|
$this->done = $done;
|
|
}
|
|
public function getDone()
|
|
{
|
|
return $this->done;
|
|
}
|
|
public function setError(Google_Service_Genomics_Status $error)
|
|
{
|
|
$this->error = $error;
|
|
}
|
|
public function getError()
|
|
{
|
|
return $this->error;
|
|
}
|
|
public function setMetadata($metadata)
|
|
{
|
|
$this->metadata = $metadata;
|
|
}
|
|
public function getMetadata()
|
|
{
|
|
return $this->metadata;
|
|
}
|
|
public function setName($name)
|
|
{
|
|
$this->name = $name;
|
|
}
|
|
public function getName()
|
|
{
|
|
return $this->name;
|
|
}
|
|
public function setResponse($response)
|
|
{
|
|
$this->response = $response;
|
|
}
|
|
public function getResponse()
|
|
{
|
|
return $this->response;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_OperationEvent extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $description;
|
|
|
|
|
|
public function setDescription($description)
|
|
{
|
|
$this->description = $description;
|
|
}
|
|
public function getDescription()
|
|
{
|
|
return $this->description;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_OperationMetadata extends Google_Collection
|
|
{
|
|
protected $collection_key = 'events';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $createTime;
|
|
protected $eventsType = 'Google_Service_Genomics_OperationEvent';
|
|
protected $eventsDataType = 'array';
|
|
public $projectId;
|
|
public $request;
|
|
|
|
|
|
public function setCreateTime($createTime)
|
|
{
|
|
$this->createTime = $createTime;
|
|
}
|
|
public function getCreateTime()
|
|
{
|
|
return $this->createTime;
|
|
}
|
|
public function setEvents($events)
|
|
{
|
|
$this->events = $events;
|
|
}
|
|
public function getEvents()
|
|
{
|
|
return $this->events;
|
|
}
|
|
public function setProjectId($projectId)
|
|
{
|
|
$this->projectId = $projectId;
|
|
}
|
|
public function getProjectId()
|
|
{
|
|
return $this->projectId;
|
|
}
|
|
public function setRequest($request)
|
|
{
|
|
$this->request = $request;
|
|
}
|
|
public function getRequest()
|
|
{
|
|
return $this->request;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_OperationMetadataRequest extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_OperationResponse extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_Policy extends Google_Collection
|
|
{
|
|
protected $collection_key = 'bindings';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
protected $bindingsType = 'Google_Service_Genomics_Binding';
|
|
protected $bindingsDataType = 'array';
|
|
public $etag;
|
|
public $version;
|
|
|
|
|
|
public function setBindings($bindings)
|
|
{
|
|
$this->bindings = $bindings;
|
|
}
|
|
public function getBindings()
|
|
{
|
|
return $this->bindings;
|
|
}
|
|
public function setEtag($etag)
|
|
{
|
|
$this->etag = $etag;
|
|
}
|
|
public function getEtag()
|
|
{
|
|
return $this->etag;
|
|
}
|
|
public function setVersion($version)
|
|
{
|
|
$this->version = $version;
|
|
}
|
|
public function getVersion()
|
|
{
|
|
return $this->version;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_Position extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $position;
|
|
public $referenceName;
|
|
public $reverseStrand;
|
|
|
|
|
|
public function setPosition($position)
|
|
{
|
|
$this->position = $position;
|
|
}
|
|
public function getPosition()
|
|
{
|
|
return $this->position;
|
|
}
|
|
public function setReferenceName($referenceName)
|
|
{
|
|
$this->referenceName = $referenceName;
|
|
}
|
|
public function getReferenceName()
|
|
{
|
|
return $this->referenceName;
|
|
}
|
|
public function setReverseStrand($reverseStrand)
|
|
{
|
|
$this->reverseStrand = $reverseStrand;
|
|
}
|
|
public function getReverseStrand()
|
|
{
|
|
return $this->reverseStrand;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_Program extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $commandLine;
|
|
public $id;
|
|
public $name;
|
|
public $prevProgramId;
|
|
public $version;
|
|
|
|
|
|
public function setCommandLine($commandLine)
|
|
{
|
|
$this->commandLine = $commandLine;
|
|
}
|
|
public function getCommandLine()
|
|
{
|
|
return $this->commandLine;
|
|
}
|
|
public function setId($id)
|
|
{
|
|
$this->id = $id;
|
|
}
|
|
public function getId()
|
|
{
|
|
return $this->id;
|
|
}
|
|
public function setName($name)
|
|
{
|
|
$this->name = $name;
|
|
}
|
|
public function getName()
|
|
{
|
|
return $this->name;
|
|
}
|
|
public function setPrevProgramId($prevProgramId)
|
|
{
|
|
$this->prevProgramId = $prevProgramId;
|
|
}
|
|
public function getPrevProgramId()
|
|
{
|
|
return $this->prevProgramId;
|
|
}
|
|
public function setVersion($version)
|
|
{
|
|
$this->version = $version;
|
|
}
|
|
public function getVersion()
|
|
{
|
|
return $this->version;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_Range extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $end;
|
|
public $referenceName;
|
|
public $start;
|
|
|
|
|
|
public function setEnd($end)
|
|
{
|
|
$this->end = $end;
|
|
}
|
|
public function getEnd()
|
|
{
|
|
return $this->end;
|
|
}
|
|
public function setReferenceName($referenceName)
|
|
{
|
|
$this->referenceName = $referenceName;
|
|
}
|
|
public function getReferenceName()
|
|
{
|
|
return $this->referenceName;
|
|
}
|
|
public function setStart($start)
|
|
{
|
|
$this->start = $start;
|
|
}
|
|
public function getStart()
|
|
{
|
|
return $this->start;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_Read extends Google_Collection
|
|
{
|
|
protected $collection_key = 'alignedQuality';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $alignedQuality;
|
|
public $alignedSequence;
|
|
protected $alignmentType = 'Google_Service_Genomics_LinearAlignment';
|
|
protected $alignmentDataType = '';
|
|
public $duplicateFragment;
|
|
public $failedVendorQualityChecks;
|
|
public $fragmentLength;
|
|
public $fragmentName;
|
|
public $id;
|
|
public $info;
|
|
protected $nextMatePositionType = 'Google_Service_Genomics_Position';
|
|
protected $nextMatePositionDataType = '';
|
|
public $numberReads;
|
|
public $properPlacement;
|
|
public $readGroupId;
|
|
public $readGroupSetId;
|
|
public $readNumber;
|
|
public $secondaryAlignment;
|
|
public $supplementaryAlignment;
|
|
|
|
|
|
public function setAlignedQuality($alignedQuality)
|
|
{
|
|
$this->alignedQuality = $alignedQuality;
|
|
}
|
|
public function getAlignedQuality()
|
|
{
|
|
return $this->alignedQuality;
|
|
}
|
|
public function setAlignedSequence($alignedSequence)
|
|
{
|
|
$this->alignedSequence = $alignedSequence;
|
|
}
|
|
public function getAlignedSequence()
|
|
{
|
|
return $this->alignedSequence;
|
|
}
|
|
public function setAlignment(Google_Service_Genomics_LinearAlignment $alignment)
|
|
{
|
|
$this->alignment = $alignment;
|
|
}
|
|
public function getAlignment()
|
|
{
|
|
return $this->alignment;
|
|
}
|
|
public function setDuplicateFragment($duplicateFragment)
|
|
{
|
|
$this->duplicateFragment = $duplicateFragment;
|
|
}
|
|
public function getDuplicateFragment()
|
|
{
|
|
return $this->duplicateFragment;
|
|
}
|
|
public function setFailedVendorQualityChecks($failedVendorQualityChecks)
|
|
{
|
|
$this->failedVendorQualityChecks = $failedVendorQualityChecks;
|
|
}
|
|
public function getFailedVendorQualityChecks()
|
|
{
|
|
return $this->failedVendorQualityChecks;
|
|
}
|
|
public function setFragmentLength($fragmentLength)
|
|
{
|
|
$this->fragmentLength = $fragmentLength;
|
|
}
|
|
public function getFragmentLength()
|
|
{
|
|
return $this->fragmentLength;
|
|
}
|
|
public function setFragmentName($fragmentName)
|
|
{
|
|
$this->fragmentName = $fragmentName;
|
|
}
|
|
public function getFragmentName()
|
|
{
|
|
return $this->fragmentName;
|
|
}
|
|
public function setId($id)
|
|
{
|
|
$this->id = $id;
|
|
}
|
|
public function getId()
|
|
{
|
|
return $this->id;
|
|
}
|
|
public function setInfo($info)
|
|
{
|
|
$this->info = $info;
|
|
}
|
|
public function getInfo()
|
|
{
|
|
return $this->info;
|
|
}
|
|
public function setNextMatePosition(Google_Service_Genomics_Position $nextMatePosition)
|
|
{
|
|
$this->nextMatePosition = $nextMatePosition;
|
|
}
|
|
public function getNextMatePosition()
|
|
{
|
|
return $this->nextMatePosition;
|
|
}
|
|
public function setNumberReads($numberReads)
|
|
{
|
|
$this->numberReads = $numberReads;
|
|
}
|
|
public function getNumberReads()
|
|
{
|
|
return $this->numberReads;
|
|
}
|
|
public function setProperPlacement($properPlacement)
|
|
{
|
|
$this->properPlacement = $properPlacement;
|
|
}
|
|
public function getProperPlacement()
|
|
{
|
|
return $this->properPlacement;
|
|
}
|
|
public function setReadGroupId($readGroupId)
|
|
{
|
|
$this->readGroupId = $readGroupId;
|
|
}
|
|
public function getReadGroupId()
|
|
{
|
|
return $this->readGroupId;
|
|
}
|
|
public function setReadGroupSetId($readGroupSetId)
|
|
{
|
|
$this->readGroupSetId = $readGroupSetId;
|
|
}
|
|
public function getReadGroupSetId()
|
|
{
|
|
return $this->readGroupSetId;
|
|
}
|
|
public function setReadNumber($readNumber)
|
|
{
|
|
$this->readNumber = $readNumber;
|
|
}
|
|
public function getReadNumber()
|
|
{
|
|
return $this->readNumber;
|
|
}
|
|
public function setSecondaryAlignment($secondaryAlignment)
|
|
{
|
|
$this->secondaryAlignment = $secondaryAlignment;
|
|
}
|
|
public function getSecondaryAlignment()
|
|
{
|
|
return $this->secondaryAlignment;
|
|
}
|
|
public function setSupplementaryAlignment($supplementaryAlignment)
|
|
{
|
|
$this->supplementaryAlignment = $supplementaryAlignment;
|
|
}
|
|
public function getSupplementaryAlignment()
|
|
{
|
|
return $this->supplementaryAlignment;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ReadGroup extends Google_Collection
|
|
{
|
|
protected $collection_key = 'programs';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $datasetId;
|
|
public $description;
|
|
protected $experimentType = 'Google_Service_Genomics_Experiment';
|
|
protected $experimentDataType = '';
|
|
public $id;
|
|
public $info;
|
|
public $name;
|
|
public $predictedInsertSize;
|
|
protected $programsType = 'Google_Service_Genomics_Program';
|
|
protected $programsDataType = 'array';
|
|
public $referenceSetId;
|
|
public $sampleId;
|
|
|
|
|
|
public function setDatasetId($datasetId)
|
|
{
|
|
$this->datasetId = $datasetId;
|
|
}
|
|
public function getDatasetId()
|
|
{
|
|
return $this->datasetId;
|
|
}
|
|
public function setDescription($description)
|
|
{
|
|
$this->description = $description;
|
|
}
|
|
public function getDescription()
|
|
{
|
|
return $this->description;
|
|
}
|
|
public function setExperiment(Google_Service_Genomics_Experiment $experiment)
|
|
{
|
|
$this->experiment = $experiment;
|
|
}
|
|
public function getExperiment()
|
|
{
|
|
return $this->experiment;
|
|
}
|
|
public function setId($id)
|
|
{
|
|
$this->id = $id;
|
|
}
|
|
public function getId()
|
|
{
|
|
return $this->id;
|
|
}
|
|
public function setInfo($info)
|
|
{
|
|
$this->info = $info;
|
|
}
|
|
public function getInfo()
|
|
{
|
|
return $this->info;
|
|
}
|
|
public function setName($name)
|
|
{
|
|
$this->name = $name;
|
|
}
|
|
public function getName()
|
|
{
|
|
return $this->name;
|
|
}
|
|
public function setPredictedInsertSize($predictedInsertSize)
|
|
{
|
|
$this->predictedInsertSize = $predictedInsertSize;
|
|
}
|
|
public function getPredictedInsertSize()
|
|
{
|
|
return $this->predictedInsertSize;
|
|
}
|
|
public function setPrograms($programs)
|
|
{
|
|
$this->programs = $programs;
|
|
}
|
|
public function getPrograms()
|
|
{
|
|
return $this->programs;
|
|
}
|
|
public function setReferenceSetId($referenceSetId)
|
|
{
|
|
$this->referenceSetId = $referenceSetId;
|
|
}
|
|
public function getReferenceSetId()
|
|
{
|
|
return $this->referenceSetId;
|
|
}
|
|
public function setSampleId($sampleId)
|
|
{
|
|
$this->sampleId = $sampleId;
|
|
}
|
|
public function getSampleId()
|
|
{
|
|
return $this->sampleId;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ReadGroupInfo extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_ReadGroupSet extends Google_Collection
|
|
{
|
|
protected $collection_key = 'readGroups';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $datasetId;
|
|
public $filename;
|
|
public $id;
|
|
public $info;
|
|
public $name;
|
|
protected $readGroupsType = 'Google_Service_Genomics_ReadGroup';
|
|
protected $readGroupsDataType = 'array';
|
|
public $referenceSetId;
|
|
|
|
|
|
public function setDatasetId($datasetId)
|
|
{
|
|
$this->datasetId = $datasetId;
|
|
}
|
|
public function getDatasetId()
|
|
{
|
|
return $this->datasetId;
|
|
}
|
|
public function setFilename($filename)
|
|
{
|
|
$this->filename = $filename;
|
|
}
|
|
public function getFilename()
|
|
{
|
|
return $this->filename;
|
|
}
|
|
public function setId($id)
|
|
{
|
|
$this->id = $id;
|
|
}
|
|
public function getId()
|
|
{
|
|
return $this->id;
|
|
}
|
|
public function setInfo($info)
|
|
{
|
|
$this->info = $info;
|
|
}
|
|
public function getInfo()
|
|
{
|
|
return $this->info;
|
|
}
|
|
public function setName($name)
|
|
{
|
|
$this->name = $name;
|
|
}
|
|
public function getName()
|
|
{
|
|
return $this->name;
|
|
}
|
|
public function setReadGroups($readGroups)
|
|
{
|
|
$this->readGroups = $readGroups;
|
|
}
|
|
public function getReadGroups()
|
|
{
|
|
return $this->readGroups;
|
|
}
|
|
public function setReferenceSetId($referenceSetId)
|
|
{
|
|
$this->referenceSetId = $referenceSetId;
|
|
}
|
|
public function getReferenceSetId()
|
|
{
|
|
return $this->referenceSetId;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ReadGroupSetInfo extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_ReadInfo extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_Reference extends Google_Collection
|
|
{
|
|
protected $collection_key = 'sourceAccessions';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $id;
|
|
public $length;
|
|
public $md5checksum;
|
|
public $name;
|
|
public $ncbiTaxonId;
|
|
public $sourceAccessions;
|
|
public $sourceUri;
|
|
|
|
|
|
public function setId($id)
|
|
{
|
|
$this->id = $id;
|
|
}
|
|
public function getId()
|
|
{
|
|
return $this->id;
|
|
}
|
|
public function setLength($length)
|
|
{
|
|
$this->length = $length;
|
|
}
|
|
public function getLength()
|
|
{
|
|
return $this->length;
|
|
}
|
|
public function setMd5checksum($md5checksum)
|
|
{
|
|
$this->md5checksum = $md5checksum;
|
|
}
|
|
public function getMd5checksum()
|
|
{
|
|
return $this->md5checksum;
|
|
}
|
|
public function setName($name)
|
|
{
|
|
$this->name = $name;
|
|
}
|
|
public function getName()
|
|
{
|
|
return $this->name;
|
|
}
|
|
public function setNcbiTaxonId($ncbiTaxonId)
|
|
{
|
|
$this->ncbiTaxonId = $ncbiTaxonId;
|
|
}
|
|
public function getNcbiTaxonId()
|
|
{
|
|
return $this->ncbiTaxonId;
|
|
}
|
|
public function setSourceAccessions($sourceAccessions)
|
|
{
|
|
$this->sourceAccessions = $sourceAccessions;
|
|
}
|
|
public function getSourceAccessions()
|
|
{
|
|
return $this->sourceAccessions;
|
|
}
|
|
public function setSourceUri($sourceUri)
|
|
{
|
|
$this->sourceUri = $sourceUri;
|
|
}
|
|
public function getSourceUri()
|
|
{
|
|
return $this->sourceUri;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ReferenceBound extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $referenceName;
|
|
public $upperBound;
|
|
|
|
|
|
public function setReferenceName($referenceName)
|
|
{
|
|
$this->referenceName = $referenceName;
|
|
}
|
|
public function getReferenceName()
|
|
{
|
|
return $this->referenceName;
|
|
}
|
|
public function setUpperBound($upperBound)
|
|
{
|
|
$this->upperBound = $upperBound;
|
|
}
|
|
public function getUpperBound()
|
|
{
|
|
return $this->upperBound;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_ReferenceSet extends Google_Collection
|
|
{
|
|
protected $collection_key = 'sourceAccessions';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $assemblyId;
|
|
public $description;
|
|
public $id;
|
|
public $md5checksum;
|
|
public $ncbiTaxonId;
|
|
public $referenceIds;
|
|
public $sourceAccessions;
|
|
public $sourceUri;
|
|
|
|
|
|
public function setAssemblyId($assemblyId)
|
|
{
|
|
$this->assemblyId = $assemblyId;
|
|
}
|
|
public function getAssemblyId()
|
|
{
|
|
return $this->assemblyId;
|
|
}
|
|
public function setDescription($description)
|
|
{
|
|
$this->description = $description;
|
|
}
|
|
public function getDescription()
|
|
{
|
|
return $this->description;
|
|
}
|
|
public function setId($id)
|
|
{
|
|
$this->id = $id;
|
|
}
|
|
public function getId()
|
|
{
|
|
return $this->id;
|
|
}
|
|
public function setMd5checksum($md5checksum)
|
|
{
|
|
$this->md5checksum = $md5checksum;
|
|
}
|
|
public function getMd5checksum()
|
|
{
|
|
return $this->md5checksum;
|
|
}
|
|
public function setNcbiTaxonId($ncbiTaxonId)
|
|
{
|
|
$this->ncbiTaxonId = $ncbiTaxonId;
|
|
}
|
|
public function getNcbiTaxonId()
|
|
{
|
|
return $this->ncbiTaxonId;
|
|
}
|
|
public function setReferenceIds($referenceIds)
|
|
{
|
|
$this->referenceIds = $referenceIds;
|
|
}
|
|
public function getReferenceIds()
|
|
{
|
|
return $this->referenceIds;
|
|
}
|
|
public function setSourceAccessions($sourceAccessions)
|
|
{
|
|
$this->sourceAccessions = $sourceAccessions;
|
|
}
|
|
public function getSourceAccessions()
|
|
{
|
|
return $this->sourceAccessions;
|
|
}
|
|
public function setSourceUri($sourceUri)
|
|
{
|
|
$this->sourceUri = $sourceUri;
|
|
}
|
|
public function getSourceUri()
|
|
{
|
|
return $this->sourceUri;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchCallSetsRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'variantSetIds';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $name;
|
|
public $pageSize;
|
|
public $pageToken;
|
|
public $variantSetIds;
|
|
|
|
|
|
public function setName($name)
|
|
{
|
|
$this->name = $name;
|
|
}
|
|
public function getName()
|
|
{
|
|
return $this->name;
|
|
}
|
|
public function setPageSize($pageSize)
|
|
{
|
|
$this->pageSize = $pageSize;
|
|
}
|
|
public function getPageSize()
|
|
{
|
|
return $this->pageSize;
|
|
}
|
|
public function setPageToken($pageToken)
|
|
{
|
|
$this->pageToken = $pageToken;
|
|
}
|
|
public function getPageToken()
|
|
{
|
|
return $this->pageToken;
|
|
}
|
|
public function setVariantSetIds($variantSetIds)
|
|
{
|
|
$this->variantSetIds = $variantSetIds;
|
|
}
|
|
public function getVariantSetIds()
|
|
{
|
|
return $this->variantSetIds;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchCallSetsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'callSets';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
protected $callSetsType = 'Google_Service_Genomics_CallSet';
|
|
protected $callSetsDataType = 'array';
|
|
public $nextPageToken;
|
|
|
|
|
|
public function setCallSets($callSets)
|
|
{
|
|
$this->callSets = $callSets;
|
|
}
|
|
public function getCallSets()
|
|
{
|
|
return $this->callSets;
|
|
}
|
|
public function setNextPageToken($nextPageToken)
|
|
{
|
|
$this->nextPageToken = $nextPageToken;
|
|
}
|
|
public function getNextPageToken()
|
|
{
|
|
return $this->nextPageToken;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchReadGroupSetsRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'datasetIds';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $datasetIds;
|
|
public $name;
|
|
public $pageSize;
|
|
public $pageToken;
|
|
|
|
|
|
public function setDatasetIds($datasetIds)
|
|
{
|
|
$this->datasetIds = $datasetIds;
|
|
}
|
|
public function getDatasetIds()
|
|
{
|
|
return $this->datasetIds;
|
|
}
|
|
public function setName($name)
|
|
{
|
|
$this->name = $name;
|
|
}
|
|
public function getName()
|
|
{
|
|
return $this->name;
|
|
}
|
|
public function setPageSize($pageSize)
|
|
{
|
|
$this->pageSize = $pageSize;
|
|
}
|
|
public function getPageSize()
|
|
{
|
|
return $this->pageSize;
|
|
}
|
|
public function setPageToken($pageToken)
|
|
{
|
|
$this->pageToken = $pageToken;
|
|
}
|
|
public function getPageToken()
|
|
{
|
|
return $this->pageToken;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchReadGroupSetsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'readGroupSets';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $nextPageToken;
|
|
protected $readGroupSetsType = 'Google_Service_Genomics_ReadGroupSet';
|
|
protected $readGroupSetsDataType = 'array';
|
|
|
|
|
|
public function setNextPageToken($nextPageToken)
|
|
{
|
|
$this->nextPageToken = $nextPageToken;
|
|
}
|
|
public function getNextPageToken()
|
|
{
|
|
return $this->nextPageToken;
|
|
}
|
|
public function setReadGroupSets($readGroupSets)
|
|
{
|
|
$this->readGroupSets = $readGroupSets;
|
|
}
|
|
public function getReadGroupSets()
|
|
{
|
|
return $this->readGroupSets;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchReadsRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'readGroupSetIds';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $end;
|
|
public $pageSize;
|
|
public $pageToken;
|
|
public $readGroupIds;
|
|
public $readGroupSetIds;
|
|
public $referenceName;
|
|
public $start;
|
|
|
|
|
|
public function setEnd($end)
|
|
{
|
|
$this->end = $end;
|
|
}
|
|
public function getEnd()
|
|
{
|
|
return $this->end;
|
|
}
|
|
public function setPageSize($pageSize)
|
|
{
|
|
$this->pageSize = $pageSize;
|
|
}
|
|
public function getPageSize()
|
|
{
|
|
return $this->pageSize;
|
|
}
|
|
public function setPageToken($pageToken)
|
|
{
|
|
$this->pageToken = $pageToken;
|
|
}
|
|
public function getPageToken()
|
|
{
|
|
return $this->pageToken;
|
|
}
|
|
public function setReadGroupIds($readGroupIds)
|
|
{
|
|
$this->readGroupIds = $readGroupIds;
|
|
}
|
|
public function getReadGroupIds()
|
|
{
|
|
return $this->readGroupIds;
|
|
}
|
|
public function setReadGroupSetIds($readGroupSetIds)
|
|
{
|
|
$this->readGroupSetIds = $readGroupSetIds;
|
|
}
|
|
public function getReadGroupSetIds()
|
|
{
|
|
return $this->readGroupSetIds;
|
|
}
|
|
public function setReferenceName($referenceName)
|
|
{
|
|
$this->referenceName = $referenceName;
|
|
}
|
|
public function getReferenceName()
|
|
{
|
|
return $this->referenceName;
|
|
}
|
|
public function setStart($start)
|
|
{
|
|
$this->start = $start;
|
|
}
|
|
public function getStart()
|
|
{
|
|
return $this->start;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchReadsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'alignments';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
protected $alignmentsType = 'Google_Service_Genomics_Read';
|
|
protected $alignmentsDataType = 'array';
|
|
public $nextPageToken;
|
|
|
|
|
|
public function setAlignments($alignments)
|
|
{
|
|
$this->alignments = $alignments;
|
|
}
|
|
public function getAlignments()
|
|
{
|
|
return $this->alignments;
|
|
}
|
|
public function setNextPageToken($nextPageToken)
|
|
{
|
|
$this->nextPageToken = $nextPageToken;
|
|
}
|
|
public function getNextPageToken()
|
|
{
|
|
return $this->nextPageToken;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchReferenceSetsRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'md5checksums';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $accessions;
|
|
public $assemblyId;
|
|
public $md5checksums;
|
|
public $pageSize;
|
|
public $pageToken;
|
|
|
|
|
|
public function setAccessions($accessions)
|
|
{
|
|
$this->accessions = $accessions;
|
|
}
|
|
public function getAccessions()
|
|
{
|
|
return $this->accessions;
|
|
}
|
|
public function setAssemblyId($assemblyId)
|
|
{
|
|
$this->assemblyId = $assemblyId;
|
|
}
|
|
public function getAssemblyId()
|
|
{
|
|
return $this->assemblyId;
|
|
}
|
|
public function setMd5checksums($md5checksums)
|
|
{
|
|
$this->md5checksums = $md5checksums;
|
|
}
|
|
public function getMd5checksums()
|
|
{
|
|
return $this->md5checksums;
|
|
}
|
|
public function setPageSize($pageSize)
|
|
{
|
|
$this->pageSize = $pageSize;
|
|
}
|
|
public function getPageSize()
|
|
{
|
|
return $this->pageSize;
|
|
}
|
|
public function setPageToken($pageToken)
|
|
{
|
|
$this->pageToken = $pageToken;
|
|
}
|
|
public function getPageToken()
|
|
{
|
|
return $this->pageToken;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchReferenceSetsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'referenceSets';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $nextPageToken;
|
|
protected $referenceSetsType = 'Google_Service_Genomics_ReferenceSet';
|
|
protected $referenceSetsDataType = 'array';
|
|
|
|
|
|
public function setNextPageToken($nextPageToken)
|
|
{
|
|
$this->nextPageToken = $nextPageToken;
|
|
}
|
|
public function getNextPageToken()
|
|
{
|
|
return $this->nextPageToken;
|
|
}
|
|
public function setReferenceSets($referenceSets)
|
|
{
|
|
$this->referenceSets = $referenceSets;
|
|
}
|
|
public function getReferenceSets()
|
|
{
|
|
return $this->referenceSets;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchReferencesRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'md5checksums';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $accessions;
|
|
public $md5checksums;
|
|
public $pageSize;
|
|
public $pageToken;
|
|
public $referenceSetId;
|
|
|
|
|
|
public function setAccessions($accessions)
|
|
{
|
|
$this->accessions = $accessions;
|
|
}
|
|
public function getAccessions()
|
|
{
|
|
return $this->accessions;
|
|
}
|
|
public function setMd5checksums($md5checksums)
|
|
{
|
|
$this->md5checksums = $md5checksums;
|
|
}
|
|
public function getMd5checksums()
|
|
{
|
|
return $this->md5checksums;
|
|
}
|
|
public function setPageSize($pageSize)
|
|
{
|
|
$this->pageSize = $pageSize;
|
|
}
|
|
public function getPageSize()
|
|
{
|
|
return $this->pageSize;
|
|
}
|
|
public function setPageToken($pageToken)
|
|
{
|
|
$this->pageToken = $pageToken;
|
|
}
|
|
public function getPageToken()
|
|
{
|
|
return $this->pageToken;
|
|
}
|
|
public function setReferenceSetId($referenceSetId)
|
|
{
|
|
$this->referenceSetId = $referenceSetId;
|
|
}
|
|
public function getReferenceSetId()
|
|
{
|
|
return $this->referenceSetId;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchReferencesResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'references';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $nextPageToken;
|
|
protected $referencesType = 'Google_Service_Genomics_Reference';
|
|
protected $referencesDataType = 'array';
|
|
|
|
|
|
public function setNextPageToken($nextPageToken)
|
|
{
|
|
$this->nextPageToken = $nextPageToken;
|
|
}
|
|
public function getNextPageToken()
|
|
{
|
|
return $this->nextPageToken;
|
|
}
|
|
public function setReferences($references)
|
|
{
|
|
$this->references = $references;
|
|
}
|
|
public function getReferences()
|
|
{
|
|
return $this->references;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchVariantSetsRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'datasetIds';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $datasetIds;
|
|
public $pageSize;
|
|
public $pageToken;
|
|
|
|
|
|
public function setDatasetIds($datasetIds)
|
|
{
|
|
$this->datasetIds = $datasetIds;
|
|
}
|
|
public function getDatasetIds()
|
|
{
|
|
return $this->datasetIds;
|
|
}
|
|
public function setPageSize($pageSize)
|
|
{
|
|
$this->pageSize = $pageSize;
|
|
}
|
|
public function getPageSize()
|
|
{
|
|
return $this->pageSize;
|
|
}
|
|
public function setPageToken($pageToken)
|
|
{
|
|
$this->pageToken = $pageToken;
|
|
}
|
|
public function getPageToken()
|
|
{
|
|
return $this->pageToken;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchVariantSetsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'variantSets';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $nextPageToken;
|
|
protected $variantSetsType = 'Google_Service_Genomics_VariantSet';
|
|
protected $variantSetsDataType = 'array';
|
|
|
|
|
|
public function setNextPageToken($nextPageToken)
|
|
{
|
|
$this->nextPageToken = $nextPageToken;
|
|
}
|
|
public function getNextPageToken()
|
|
{
|
|
return $this->nextPageToken;
|
|
}
|
|
public function setVariantSets($variantSets)
|
|
{
|
|
$this->variantSets = $variantSets;
|
|
}
|
|
public function getVariantSets()
|
|
{
|
|
return $this->variantSets;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchVariantsRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'variantSetIds';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $callSetIds;
|
|
public $end;
|
|
public $maxCalls;
|
|
public $pageSize;
|
|
public $pageToken;
|
|
public $referenceName;
|
|
public $start;
|
|
public $variantName;
|
|
public $variantSetIds;
|
|
|
|
|
|
public function setCallSetIds($callSetIds)
|
|
{
|
|
$this->callSetIds = $callSetIds;
|
|
}
|
|
public function getCallSetIds()
|
|
{
|
|
return $this->callSetIds;
|
|
}
|
|
public function setEnd($end)
|
|
{
|
|
$this->end = $end;
|
|
}
|
|
public function getEnd()
|
|
{
|
|
return $this->end;
|
|
}
|
|
public function setMaxCalls($maxCalls)
|
|
{
|
|
$this->maxCalls = $maxCalls;
|
|
}
|
|
public function getMaxCalls()
|
|
{
|
|
return $this->maxCalls;
|
|
}
|
|
public function setPageSize($pageSize)
|
|
{
|
|
$this->pageSize = $pageSize;
|
|
}
|
|
public function getPageSize()
|
|
{
|
|
return $this->pageSize;
|
|
}
|
|
public function setPageToken($pageToken)
|
|
{
|
|
$this->pageToken = $pageToken;
|
|
}
|
|
public function getPageToken()
|
|
{
|
|
return $this->pageToken;
|
|
}
|
|
public function setReferenceName($referenceName)
|
|
{
|
|
$this->referenceName = $referenceName;
|
|
}
|
|
public function getReferenceName()
|
|
{
|
|
return $this->referenceName;
|
|
}
|
|
public function setStart($start)
|
|
{
|
|
$this->start = $start;
|
|
}
|
|
public function getStart()
|
|
{
|
|
return $this->start;
|
|
}
|
|
public function setVariantName($variantName)
|
|
{
|
|
$this->variantName = $variantName;
|
|
}
|
|
public function getVariantName()
|
|
{
|
|
return $this->variantName;
|
|
}
|
|
public function setVariantSetIds($variantSetIds)
|
|
{
|
|
$this->variantSetIds = $variantSetIds;
|
|
}
|
|
public function getVariantSetIds()
|
|
{
|
|
return $this->variantSetIds;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SearchVariantsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'variants';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $nextPageToken;
|
|
protected $variantsType = 'Google_Service_Genomics_Variant';
|
|
protected $variantsDataType = 'array';
|
|
|
|
|
|
public function setNextPageToken($nextPageToken)
|
|
{
|
|
$this->nextPageToken = $nextPageToken;
|
|
}
|
|
public function getNextPageToken()
|
|
{
|
|
return $this->nextPageToken;
|
|
}
|
|
public function setVariants($variants)
|
|
{
|
|
$this->variants = $variants;
|
|
}
|
|
public function getVariants()
|
|
{
|
|
return $this->variants;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_SetIamPolicyRequest extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
protected $policyType = 'Google_Service_Genomics_Policy';
|
|
protected $policyDataType = '';
|
|
|
|
|
|
public function setPolicy(Google_Service_Genomics_Policy $policy)
|
|
{
|
|
$this->policy = $policy;
|
|
}
|
|
public function getPolicy()
|
|
{
|
|
return $this->policy;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_Status extends Google_Collection
|
|
{
|
|
protected $collection_key = 'details';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $code;
|
|
public $details;
|
|
public $message;
|
|
|
|
|
|
public function setCode($code)
|
|
{
|
|
$this->code = $code;
|
|
}
|
|
public function getCode()
|
|
{
|
|
return $this->code;
|
|
}
|
|
public function setDetails($details)
|
|
{
|
|
$this->details = $details;
|
|
}
|
|
public function getDetails()
|
|
{
|
|
return $this->details;
|
|
}
|
|
public function setMessage($message)
|
|
{
|
|
$this->message = $message;
|
|
}
|
|
public function getMessage()
|
|
{
|
|
return $this->message;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_StatusDetails extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_TestIamPermissionsRequest extends Google_Collection
|
|
{
|
|
protected $collection_key = 'permissions';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $permissions;
|
|
|
|
|
|
public function setPermissions($permissions)
|
|
{
|
|
$this->permissions = $permissions;
|
|
}
|
|
public function getPermissions()
|
|
{
|
|
return $this->permissions;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_TestIamPermissionsResponse extends Google_Collection
|
|
{
|
|
protected $collection_key = 'permissions';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $permissions;
|
|
|
|
|
|
public function setPermissions($permissions)
|
|
{
|
|
$this->permissions = $permissions;
|
|
}
|
|
public function getPermissions()
|
|
{
|
|
return $this->permissions;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_UndeleteDatasetRequest extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_Variant extends Google_Collection
|
|
{
|
|
protected $collection_key = 'names';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $alternateBases;
|
|
protected $callsType = 'Google_Service_Genomics_VariantCall';
|
|
protected $callsDataType = 'array';
|
|
public $created;
|
|
public $end;
|
|
public $filter;
|
|
public $id;
|
|
public $info;
|
|
public $names;
|
|
public $quality;
|
|
public $referenceBases;
|
|
public $referenceName;
|
|
public $start;
|
|
public $variantSetId;
|
|
|
|
|
|
public function setAlternateBases($alternateBases)
|
|
{
|
|
$this->alternateBases = $alternateBases;
|
|
}
|
|
public function getAlternateBases()
|
|
{
|
|
return $this->alternateBases;
|
|
}
|
|
public function setCalls($calls)
|
|
{
|
|
$this->calls = $calls;
|
|
}
|
|
public function getCalls()
|
|
{
|
|
return $this->calls;
|
|
}
|
|
public function setCreated($created)
|
|
{
|
|
$this->created = $created;
|
|
}
|
|
public function getCreated()
|
|
{
|
|
return $this->created;
|
|
}
|
|
public function setEnd($end)
|
|
{
|
|
$this->end = $end;
|
|
}
|
|
public function getEnd()
|
|
{
|
|
return $this->end;
|
|
}
|
|
public function setFilter($filter)
|
|
{
|
|
$this->filter = $filter;
|
|
}
|
|
public function getFilter()
|
|
{
|
|
return $this->filter;
|
|
}
|
|
public function setId($id)
|
|
{
|
|
$this->id = $id;
|
|
}
|
|
public function getId()
|
|
{
|
|
return $this->id;
|
|
}
|
|
public function setInfo($info)
|
|
{
|
|
$this->info = $info;
|
|
}
|
|
public function getInfo()
|
|
{
|
|
return $this->info;
|
|
}
|
|
public function setNames($names)
|
|
{
|
|
$this->names = $names;
|
|
}
|
|
public function getNames()
|
|
{
|
|
return $this->names;
|
|
}
|
|
public function setQuality($quality)
|
|
{
|
|
$this->quality = $quality;
|
|
}
|
|
public function getQuality()
|
|
{
|
|
return $this->quality;
|
|
}
|
|
public function setReferenceBases($referenceBases)
|
|
{
|
|
$this->referenceBases = $referenceBases;
|
|
}
|
|
public function getReferenceBases()
|
|
{
|
|
return $this->referenceBases;
|
|
}
|
|
public function setReferenceName($referenceName)
|
|
{
|
|
$this->referenceName = $referenceName;
|
|
}
|
|
public function getReferenceName()
|
|
{
|
|
return $this->referenceName;
|
|
}
|
|
public function setStart($start)
|
|
{
|
|
$this->start = $start;
|
|
}
|
|
public function getStart()
|
|
{
|
|
return $this->start;
|
|
}
|
|
public function setVariantSetId($variantSetId)
|
|
{
|
|
$this->variantSetId = $variantSetId;
|
|
}
|
|
public function getVariantSetId()
|
|
{
|
|
return $this->variantSetId;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_VariantCall extends Google_Collection
|
|
{
|
|
protected $collection_key = 'genotypeLikelihood';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $callSetId;
|
|
public $callSetName;
|
|
public $genotype;
|
|
public $genotypeLikelihood;
|
|
public $info;
|
|
public $phaseset;
|
|
|
|
|
|
public function setCallSetId($callSetId)
|
|
{
|
|
$this->callSetId = $callSetId;
|
|
}
|
|
public function getCallSetId()
|
|
{
|
|
return $this->callSetId;
|
|
}
|
|
public function setCallSetName($callSetName)
|
|
{
|
|
$this->callSetName = $callSetName;
|
|
}
|
|
public function getCallSetName()
|
|
{
|
|
return $this->callSetName;
|
|
}
|
|
public function setGenotype($genotype)
|
|
{
|
|
$this->genotype = $genotype;
|
|
}
|
|
public function getGenotype()
|
|
{
|
|
return $this->genotype;
|
|
}
|
|
public function setGenotypeLikelihood($genotypeLikelihood)
|
|
{
|
|
$this->genotypeLikelihood = $genotypeLikelihood;
|
|
}
|
|
public function getGenotypeLikelihood()
|
|
{
|
|
return $this->genotypeLikelihood;
|
|
}
|
|
public function setInfo($info)
|
|
{
|
|
$this->info = $info;
|
|
}
|
|
public function getInfo()
|
|
{
|
|
return $this->info;
|
|
}
|
|
public function setPhaseset($phaseset)
|
|
{
|
|
$this->phaseset = $phaseset;
|
|
}
|
|
public function getPhaseset()
|
|
{
|
|
return $this->phaseset;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_VariantCallInfo extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_VariantInfo extends Google_Model
|
|
{
|
|
}
|
|
|
|
class Google_Service_Genomics_VariantSet extends Google_Collection
|
|
{
|
|
protected $collection_key = 'referenceBounds';
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $datasetId;
|
|
public $id;
|
|
protected $metadataType = 'Google_Service_Genomics_VariantSetMetadata';
|
|
protected $metadataDataType = 'array';
|
|
protected $referenceBoundsType = 'Google_Service_Genomics_ReferenceBound';
|
|
protected $referenceBoundsDataType = 'array';
|
|
|
|
|
|
public function setDatasetId($datasetId)
|
|
{
|
|
$this->datasetId = $datasetId;
|
|
}
|
|
public function getDatasetId()
|
|
{
|
|
return $this->datasetId;
|
|
}
|
|
public function setId($id)
|
|
{
|
|
$this->id = $id;
|
|
}
|
|
public function getId()
|
|
{
|
|
return $this->id;
|
|
}
|
|
public function setMetadata($metadata)
|
|
{
|
|
$this->metadata = $metadata;
|
|
}
|
|
public function getMetadata()
|
|
{
|
|
return $this->metadata;
|
|
}
|
|
public function setReferenceBounds($referenceBounds)
|
|
{
|
|
$this->referenceBounds = $referenceBounds;
|
|
}
|
|
public function getReferenceBounds()
|
|
{
|
|
return $this->referenceBounds;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_VariantSetMetadata extends Google_Model
|
|
{
|
|
protected $internal_gapi_mappings = array(
|
|
);
|
|
public $description;
|
|
public $id;
|
|
public $info;
|
|
public $key;
|
|
public $number;
|
|
public $type;
|
|
public $value;
|
|
|
|
|
|
public function setDescription($description)
|
|
{
|
|
$this->description = $description;
|
|
}
|
|
public function getDescription()
|
|
{
|
|
return $this->description;
|
|
}
|
|
public function setId($id)
|
|
{
|
|
$this->id = $id;
|
|
}
|
|
public function getId()
|
|
{
|
|
return $this->id;
|
|
}
|
|
public function setInfo($info)
|
|
{
|
|
$this->info = $info;
|
|
}
|
|
public function getInfo()
|
|
{
|
|
return $this->info;
|
|
}
|
|
public function setKey($key)
|
|
{
|
|
$this->key = $key;
|
|
}
|
|
public function getKey()
|
|
{
|
|
return $this->key;
|
|
}
|
|
public function setNumber($number)
|
|
{
|
|
$this->number = $number;
|
|
}
|
|
public function getNumber()
|
|
{
|
|
return $this->number;
|
|
}
|
|
public function setType($type)
|
|
{
|
|
$this->type = $type;
|
|
}
|
|
public function getType()
|
|
{
|
|
return $this->type;
|
|
}
|
|
public function setValue($value)
|
|
{
|
|
$this->value = $value;
|
|
}
|
|
public function getValue()
|
|
{
|
|
return $this->value;
|
|
}
|
|
}
|
|
|
|
class Google_Service_Genomics_VariantSetMetadataInfo extends Google_Model
|
|
{
|
|
}
|